miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 116141 0.7 0.495003
Target:  5'- aGCCGCGcGAGCCCgCGAGCuucaGCaGGCa- -3'
miRNA:   3'- -CGGUGC-UUCGGGaGCUCG----UGcCCGag -5'
29544 3' -59.6 NC_006151.1 + 136361 0.7 0.495003
Target:  5'- cCCGCGggGCUgcuCUCGuuCGCGGcGCUCu -3'
miRNA:   3'- cGGUGCuuCGG---GAGCucGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 2190 0.7 0.495003
Target:  5'- cGCC-CGAGGCCCccgCGGGCcggUGGGuCUCc -3'
miRNA:   3'- -CGGuGCUUCGGGa--GCUCGu--GCCC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 130839 0.7 0.504467
Target:  5'- cGgCGCGGAGUCgUCGccgucggcGGCGCGGGCg- -3'
miRNA:   3'- -CgGUGCUUCGGgAGC--------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 78399 0.7 0.504467
Target:  5'- gGCCACGGcGGCUCUCGGGcCGCGaGCg- -3'
miRNA:   3'- -CGGUGCU-UCGGGAGCUC-GUGCcCGag -5'
29544 3' -59.6 NC_006151.1 + 125289 0.7 0.514009
Target:  5'- cGgCACGggGCaCCUgCGcaucacCACGGGCUCg -3'
miRNA:   3'- -CgGUGCuuCG-GGA-GCuc----GUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 81275 0.7 0.514009
Target:  5'- cGCCucgGCGggGaUCUCGGGCGCGGcGCg- -3'
miRNA:   3'- -CGG---UGCuuCgGGAGCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 98046 0.7 0.514009
Target:  5'- -gCGCGAgcaccaccAGCCC-CGGGCGCucggccugGGGCUCg -3'
miRNA:   3'- cgGUGCU--------UCGGGaGCUCGUG--------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 60713 0.7 0.514009
Target:  5'- cGCCGCGAccucGGCCC-CGAggugccggaGCACGaGGCa- -3'
miRNA:   3'- -CGGUGCU----UCGGGaGCU---------CGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 59943 0.7 0.514009
Target:  5'- aGCgGCGGcucgcAGCCCUCGAGCGCcacccgcaGGCg- -3'
miRNA:   3'- -CGgUGCU-----UCGGGAGCUCGUGc-------CCGag -5'
29544 3' -59.6 NC_006151.1 + 128538 0.7 0.514009
Target:  5'- gGCCACGGcgGGCCCgCcGGCGCGGuGC-Cg -3'
miRNA:   3'- -CGGUGCU--UCGGGaGcUCGUGCC-CGaG- -5'
29544 3' -59.6 NC_006151.1 + 129477 0.7 0.523623
Target:  5'- aGCC-CGuccAGGUCCUCGgagggcAGCGCGGGCg- -3'
miRNA:   3'- -CGGuGC---UUCGGGAGC------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 83556 0.7 0.523623
Target:  5'- cGUCAucuCGGgcgGGCCCUCGAcCGCGGGCcCg -3'
miRNA:   3'- -CGGU---GCU---UCGGGAGCUcGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 116090 0.7 0.523623
Target:  5'- cGCCGcCGucGUCCUCGucggcgauGGCGCGGcGCUUg -3'
miRNA:   3'- -CGGU-GCuuCGGGAGC--------UCGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 28091 0.7 0.523623
Target:  5'- cGUC-CGGGcGUCCUCGAGCgggGCGcGGCUCc -3'
miRNA:   3'- -CGGuGCUU-CGGGAGCUCG---UGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 88338 0.7 0.527488
Target:  5'- gGCCACGcuGUcgcgguaccacacggCCUCGcAGCGCaGGCUCg -3'
miRNA:   3'- -CGGUGCuuCG---------------GGAGC-UCGUGcCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 76047 0.69 0.543051
Target:  5'- uCCGCGAgccGGCCCUCGuagAGCGugaaGGGCg- -3'
miRNA:   3'- cGGUGCU---UCGGGAGC---UCGUg---CCCGag -5'
29544 3' -59.6 NC_006151.1 + 135718 0.69 0.543051
Target:  5'- uGCuCACGGgcaggAGCCCUCGGGgGCGGuCUa -3'
miRNA:   3'- -CG-GUGCU-----UCGGGAGCUCgUGCCcGAg -5'
29544 3' -59.6 NC_006151.1 + 103274 0.69 0.543051
Target:  5'- gGCCACGugcuGAGCCaggagaCGcGCGCGcGGCUCg -3'
miRNA:   3'- -CGGUGC----UUCGGga----GCuCGUGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 106383 0.69 0.543051
Target:  5'- cGCCGCGgcGCCCgcuGcGCgACGGGCa- -3'
miRNA:   3'- -CGGUGCuuCGGGag-CuCG-UGCCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.