Results 101 - 120 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29544 | 3' | -59.6 | NC_006151.1 | + | 132574 | 0.69 | 0.543051 |
Target: 5'- uCCACGGccGGgaCUCGcGGCAUGGGCUCc -3' miRNA: 3'- cGGUGCU--UCggGAGC-UCGUGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 76047 | 0.69 | 0.543051 |
Target: 5'- uCCGCGAgccGGCCCUCGuagAGCGugaaGGGCg- -3' miRNA: 3'- cGGUGCU---UCGGGAGC---UCGUg---CCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 77001 | 0.69 | 0.549907 |
Target: 5'- cGCCGCGAggguGGCCCgCGAGCcguggagcgccaggACGaGGCa- -3' miRNA: 3'- -CGGUGCU----UCGGGaGCUCG--------------UGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 21496 | 0.69 | 0.552854 |
Target: 5'- gGCCGgGggGCg--CGGGCgucaccgggGCGGGCUCg -3' miRNA: 3'- -CGGUgCuuCGggaGCUCG---------UGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 123254 | 0.69 | 0.552854 |
Target: 5'- uCUGCGAGGCCgCcgCGcGCGCGGGCa- -3' miRNA: 3'- cGGUGCUUCGG-Ga-GCuCGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 86449 | 0.69 | 0.55679 |
Target: 5'- cGCCcgGCGAGGCCCcCGAcgagacgcucuuugcGCACGuGGCg- -3' miRNA: 3'- -CGG--UGCUUCGGGaGCU---------------CGUGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 57259 | 0.69 | 0.561722 |
Target: 5'- uCCGCGcGGCCCUCGAcggccucGCGCagcaGGGCg- -3' miRNA: 3'- cGGUGCuUCGGGAGCU-------CGUG----CCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 20811 | 0.69 | 0.56271 |
Target: 5'- aGCCGCgGAAGgCCUCGugguGCACgcggGGGCa- -3' miRNA: 3'- -CGGUG-CUUCgGGAGCu---CGUG----CCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 66765 | 0.69 | 0.572612 |
Target: 5'- cGCCGCGAcggccGCCCUCGGG-ACGgcGGCg- -3' miRNA: 3'- -CGGUGCUu----CGGGAGCUCgUGC--CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 99545 | 0.69 | 0.572612 |
Target: 5'- cCCACGGAGCacgUGGGCGCGGcGCg- -3' miRNA: 3'- cGGUGCUUCGggaGCUCGUGCC-CGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 714 | 0.69 | 0.572612 |
Target: 5'- cGUCGCaccgGggGUCCgCGGGCGgGGGCUUc -3' miRNA: 3'- -CGGUG----CuuCGGGaGCUCGUgCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 18472 | 0.69 | 0.572612 |
Target: 5'- cGCCGuCGuaguAGUCCUCGuGCGUGGGCa- -3' miRNA: 3'- -CGGU-GCu---UCGGGAGCuCGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 65682 | 0.69 | 0.572612 |
Target: 5'- aCgGCGAGGUCCccgucCGGGCGCGGGaUCa -3' miRNA: 3'- cGgUGCUUCGGGa----GCUCGUGCCCgAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 74773 | 0.69 | 0.582555 |
Target: 5'- cGCCACG-AGCCgCgCGAGCGCGcagaagguGcGCUCg -3' miRNA: 3'- -CGGUGCuUCGG-GaGCUCGUGC--------C-CGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 78194 | 0.69 | 0.582555 |
Target: 5'- cGCgGCGGAcCCCuucuUCGGG-ACGGGCUCc -3' miRNA: 3'- -CGgUGCUUcGGG----AGCUCgUGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 118220 | 0.69 | 0.582555 |
Target: 5'- gGUgGCGGGcGCCCggaccacCGGGCucggcgGCGGGCUCa -3' miRNA: 3'- -CGgUGCUU-CGGGa------GCUCG------UGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 130266 | 0.69 | 0.582555 |
Target: 5'- gGCCggcGCGcGGCCC-CGAGgcCGCGGGCg- -3' miRNA: 3'- -CGG---UGCuUCGGGaGCUC--GUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 77073 | 0.69 | 0.582555 |
Target: 5'- gGCCAgGAGGCUCaccacgugCGAGCugaagcGCGGGCg- -3' miRNA: 3'- -CGGUgCUUCGGGa-------GCUCG------UGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 67247 | 0.69 | 0.582555 |
Target: 5'- gGCCACGGAGCCCguguUCGAGgagaucCACGcGCg- -3' miRNA: 3'- -CGGUGCUUCGGG----AGCUC------GUGCcCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 78713 | 0.68 | 0.592532 |
Target: 5'- cGCCGCGAcggcGCCCgUgGGGCGCGcGCUg -3' miRNA: 3'- -CGGUGCUu---CGGG-AgCUCGUGCcCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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