Results 61 - 80 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29544 | 3' | -59.6 | NC_006151.1 | + | 105070 | 0.67 | 0.692655 |
Target: 5'- cGCC-CGAgcuggacgugcaGGCCgUCGAGUggcugcaccagGCGcGGCUCa -3' miRNA: 3'- -CGGuGCU------------UCGGgAGCUCG-----------UGC-CCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 35149 | 0.67 | 0.691665 |
Target: 5'- cGCCGCGGccaagauGGCCgCagagCGGGC-CGGGCa- -3' miRNA: 3'- -CGGUGCU-------UCGG-Ga---GCUCGuGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 134259 | 0.67 | 0.686704 |
Target: 5'- cGCgGCGAggugcaggcgauuguAGCCC-CGGGCcgcccACGGGCg- -3' miRNA: 3'- -CGgUGCU---------------UCGGGaGCUCG-----UGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 142876 | 0.67 | 0.686704 |
Target: 5'- gGCCcccagcgcacccaagGCGAA-CCCUCGcgggcgccaccGGCGCGGGCa- -3' miRNA: 3'- -CGG---------------UGCUUcGGGAGC-----------UCGUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 27392 | 0.67 | 0.682728 |
Target: 5'- aCgGCGggGa----GGGCACGGGCUCg -3' miRNA: 3'- cGgUGCuuCgggagCUCGUGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 5734 | 0.67 | 0.682728 |
Target: 5'- cGCCGgggucCGAGGCCgCgccgCcGGCcCGGGCUCa -3' miRNA: 3'- -CGGU-----GCUUCGG-Ga---GcUCGuGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 47209 | 0.67 | 0.682728 |
Target: 5'- gGCUcuCGggGCUCUCGggucGGCugGGcgGCUCg -3' miRNA: 3'- -CGGu-GCuuCGGGAGC----UCGugCC--CGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 125090 | 0.67 | 0.682728 |
Target: 5'- gGCC-CGAGGUguaCCUCGcccGCGgGGGCUUc -3' miRNA: 3'- -CGGuGCUUCG---GGAGCu--CGUgCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 37950 | 0.67 | 0.682728 |
Target: 5'- gGCCGCGu-GCCCcgCGAGCugGcGGaCg- -3' miRNA: 3'- -CGGUGCuuCGGGa-GCUCGugC-CC-Gag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 61437 | 0.67 | 0.682728 |
Target: 5'- cGCCGCGgcGCCCgcccgCGuccgccgccauGUGCGGGC-Cg -3' miRNA: 3'- -CGGUGCuuCGGGa----GCu----------CGUGCCCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 83150 | 0.67 | 0.682728 |
Target: 5'- cGCCAaagaGGGuGUCCUgGAGCuCGGGgUCg -3' miRNA: 3'- -CGGUg---CUU-CGGGAgCUCGuGCCCgAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 102584 | 0.67 | 0.682728 |
Target: 5'- cGCgCGCGAGuCCCgCGAGUcgcaGCGGGCg- -3' miRNA: 3'- -CG-GUGCUUcGGGaGCUCG----UGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 122745 | 0.67 | 0.682728 |
Target: 5'- cCCGCGcGGCCg-CGAGCucgacaucaucgACGGGCUg -3' miRNA: 3'- cGGUGCuUCGGgaGCUCG------------UGCCCGAg -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 51672 | 0.67 | 0.672761 |
Target: 5'- cCCGCucGGGCuCCUCGcGCAgCGGGUUCa -3' miRNA: 3'- cGGUGc-UUCG-GGAGCuCGU-GCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 141268 | 0.67 | 0.672761 |
Target: 5'- aGUCGCGggGCCUcggCGGcuGCGguccgaugacggUGGGCUCg -3' miRNA: 3'- -CGGUGCuuCGGGa--GCU--CGU------------GCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 72418 | 0.67 | 0.662761 |
Target: 5'- aCCACGcGGCCCUCGcaccucuGCA-GGGC-Cg -3' miRNA: 3'- cGGUGCuUCGGGAGCu------CGUgCCCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 117243 | 0.67 | 0.662761 |
Target: 5'- uCCACGucggcGGGCCCga-GGCGCGGGC-Cg -3' miRNA: 3'- cGGUGC-----UUCGGGagcUCGUGCCCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 57751 | 0.67 | 0.662761 |
Target: 5'- cGCCGC--AGCCgCUCGuGGCcCGGGCa- -3' miRNA: 3'- -CGGUGcuUCGG-GAGC-UCGuGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 13064 | 0.67 | 0.662761 |
Target: 5'- cGCCGCGccccuuuuUCCUCGAGaGCGGGCg- -3' miRNA: 3'- -CGGUGCuuc-----GGGAGCUCgUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 34599 | 0.67 | 0.652738 |
Target: 5'- cGCCcuCGGAGCgCgcgcCGAGCGCGaGGCg- -3' miRNA: 3'- -CGGu-GCUUCGgGa---GCUCGUGC-CCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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