Results 81 - 100 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29544 | 3' | -59.6 | NC_006151.1 | + | 135156 | 0.67 | 0.652738 |
Target: 5'- aGCCcgGCGGgcgcGGCCCggaCGGGCGCcGGCUg -3' miRNA: 3'- -CGG--UGCU----UCGGGa--GCUCGUGcCCGAg -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 31022 | 0.67 | 0.652738 |
Target: 5'- cGCCGcCGcGGCCCUCGcGGCcCGGGa-- -3' miRNA: 3'- -CGGU-GCuUCGGGAGC-UCGuGCCCgag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 92454 | 0.67 | 0.652738 |
Target: 5'- uGCCGCGAcGUCCUCGcgAGcCugGGGgUg -3' miRNA: 3'- -CGGUGCUuCGGGAGC--UC-GugCCCgAg -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 34599 | 0.67 | 0.652738 |
Target: 5'- cGCCcuCGGAGCgCgcgcCGAGCGCGaGGCg- -3' miRNA: 3'- -CGGu-GCUUCGgGa---GCUCGUGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 104527 | 0.67 | 0.652738 |
Target: 5'- cGCCGCGGcuuCCC-CGAGUACGaGGC-Cg -3' miRNA: 3'- -CGGUGCUuc-GGGaGCUCGUGC-CCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 64056 | 0.68 | 0.642699 |
Target: 5'- uCCAgCGAGGCCC-CGAccaugccgguGCGCGGGUcCa -3' miRNA: 3'- cGGU-GCUUCGGGaGCU----------CGUGCCCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 98547 | 0.68 | 0.642699 |
Target: 5'- aCCACGGccGCCCUCaccgaGGC-CGGGCUg -3' miRNA: 3'- cGGUGCUu-CGGGAGc----UCGuGCCCGAg -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 21555 | 0.68 | 0.642699 |
Target: 5'- gGCCugGGccucggcgAGCCCgcCGAgggccGCGCGGGgUCg -3' miRNA: 3'- -CGGugCU--------UCGGGa-GCU-----CGUGCCCgAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 60882 | 0.68 | 0.642699 |
Target: 5'- aGCCGCGcAGCagCCgcgCGAGCA-GGGCg- -3' miRNA: 3'- -CGGUGCuUCG--GGa--GCUCGUgCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 76294 | 0.68 | 0.642699 |
Target: 5'- aGCgGCGAucgaGGCgCUUGAucauguaguuguGCACGGGCUg -3' miRNA: 3'- -CGgUGCU----UCGgGAGCU------------CGUGCCCGAg -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 134761 | 0.68 | 0.642699 |
Target: 5'- cGCgCGCGggGCCCgcggcuUCGGcucCACGGGCc- -3' miRNA: 3'- -CG-GUGCuuCGGG------AGCUc--GUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 65936 | 0.68 | 0.642699 |
Target: 5'- cGCCGCc-GGCCCaguccucgUCGAGCGCGGccGCgUCg -3' miRNA: 3'- -CGGUGcuUCGGG--------AGCUCGUGCC--CG-AG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 141132 | 0.68 | 0.642699 |
Target: 5'- aGCCccccccagAgGAAGCCCaCGAGCAccauCGGGCg- -3' miRNA: 3'- -CGG--------UgCUUCGGGaGCUCGU----GCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 99234 | 0.68 | 0.642699 |
Target: 5'- cGCCGCugcaggucgugGAGGCgCUCGugacCGCGGGCUUc -3' miRNA: 3'- -CGGUG-----------CUUCGgGAGCuc--GUGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 114167 | 0.68 | 0.63868 |
Target: 5'- aCCGCGcGGCCCUCGuGCugGccuacgugcagcaGCUCa -3' miRNA: 3'- cGGUGCuUCGGGAGCuCGugCc------------CGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 97436 | 0.68 | 0.636671 |
Target: 5'- gGCCAgGAggaAGCUgagggcgucgccgagCUCGGGCAgGcGGCUCa -3' miRNA: 3'- -CGGUgCU---UCGG---------------GAGCUCGUgC-CCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 100221 | 0.68 | 0.632652 |
Target: 5'- gGCCGCGGGcGCCgUggcCGAGCGCGuGGUg- -3' miRNA: 3'- -CGGUGCUU-CGGgA---GCUCGUGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 57477 | 0.68 | 0.632652 |
Target: 5'- cGCCGCGgcGgCCUCGcaggcgacgcGCACGcGCUCg -3' miRNA: 3'- -CGGUGCuuCgGGAGCu---------CGUGCcCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 31232 | 0.68 | 0.632652 |
Target: 5'- gGCCGgccGGCCCggCGAGCgaGCGGGCg- -3' miRNA: 3'- -CGGUgcuUCGGGa-GCUCG--UGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 63440 | 0.68 | 0.632652 |
Target: 5'- cGCacaGCGAGGCCaggUCGAGCGucCGGuucuGCUCg -3' miRNA: 3'- -CGg--UGCUUCGGg--AGCUCGU--GCC----CGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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