miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 57477 0.68 0.632652
Target:  5'- cGCCGCGgcGgCCUCGcaggcgacgcGCACGcGCUCg -3'
miRNA:   3'- -CGGUGCuuCgGGAGCu---------CGUGCcCGAG- -5'
29544 3' -59.6 NC_006151.1 + 57701 0.66 0.722111
Target:  5'- cGCCgaaGAAGgCCaCGAGCGCcGGCUUg -3'
miRNA:   3'- -CGGug-CUUCgGGaGCUCGUGcCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 57751 0.67 0.662761
Target:  5'- cGCCGC--AGCCgCUCGuGGCcCGGGCa- -3'
miRNA:   3'- -CGGUGcuUCGG-GAGC-UCGuGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 59371 0.71 0.467116
Target:  5'- cGCCGCGcGGCCgUCGucgcguccAGCACGuGGCa- -3'
miRNA:   3'- -CGGUGCuUCGGgAGC--------UCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 59530 0.71 0.431243
Target:  5'- cGCCGCGugagGGCCCa-GcGCGCGGGCa- -3'
miRNA:   3'- -CGGUGCu---UCGGGagCuCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 59943 0.7 0.514009
Target:  5'- aGCgGCGGcucgcAGCCCUCGAGCGCcacccgcaGGCg- -3'
miRNA:   3'- -CGgUGCU-----UCGGGAGCUCGUGc-------CCGag -5'
29544 3' -59.6 NC_006151.1 + 60172 0.67 0.692655
Target:  5'- aGCC-CG-AGCCCaCGAcgugguucagcaGCACGGGCg- -3'
miRNA:   3'- -CGGuGCuUCGGGaGCU------------CGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 60713 0.7 0.514009
Target:  5'- cGCCGCGAccucGGCCC-CGAggugccggaGCACGaGGCa- -3'
miRNA:   3'- -CGGUGCU----UCGGGaGCU---------CGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 60882 0.68 0.642699
Target:  5'- aGCCGCGcAGCagCCgcgCGAGCA-GGGCg- -3'
miRNA:   3'- -CGGUGCuUCG--GGa--GCUCGUgCCCGag -5'
29544 3' -59.6 NC_006151.1 + 61437 0.67 0.682728
Target:  5'- cGCCGCGgcGCCCgcccgCGuccgccgccauGUGCGGGC-Cg -3'
miRNA:   3'- -CGGUGCuuCGGGa----GCu----------CGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 62337 0.72 0.404579
Target:  5'- cGCCaaguucaGCGAGGCCCUCGGggagacGCACGGcGUcgUCa -3'
miRNA:   3'- -CGG-------UGCUUCGGGAGCU------CGUGCC-CG--AG- -5'
29544 3' -59.6 NC_006151.1 + 63167 0.74 0.319533
Target:  5'- cGgUACGggGCCUUgGGGCGCacggggccGGGCUCg -3'
miRNA:   3'- -CgGUGCuuCGGGAgCUCGUG--------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 63440 0.68 0.632652
Target:  5'- cGCacaGCGAGGCCaggUCGAGCGucCGGuucuGCUCg -3'
miRNA:   3'- -CGg--UGCUUCGGg--AGCUCGU--GCC----CGAG- -5'
29544 3' -59.6 NC_006151.1 + 63890 0.67 0.699576
Target:  5'- cGCguCGggGCgCUCGAGCaggcgcgcguacgcGCgcgccgugGGGCUCg -3'
miRNA:   3'- -CGguGCuuCGgGAGCUCG--------------UG--------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 64056 0.68 0.642699
Target:  5'- uCCAgCGAGGCCC-CGAccaugccgguGCGCGGGUcCa -3'
miRNA:   3'- cGGU-GCUUCGGGaGCU----------CGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 64194 0.67 0.692655
Target:  5'- cCCGCGAucGCCC-CGGGCAgguccggcgUGGGCg- -3'
miRNA:   3'- cGGUGCUu-CGGGaGCUCGU---------GCCCGag -5'
29544 3' -59.6 NC_006151.1 + 64478 0.79 0.15604
Target:  5'- cGCCGCGGcggggacGCCCgCGGGCGCGGGCg- -3'
miRNA:   3'- -CGGUGCUu------CGGGaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 64740 0.66 0.711376
Target:  5'- gGCCACGAgcucgagcagcggGGCCaC-CGuGCGCGGGggCu -3'
miRNA:   3'- -CGGUGCU-------------UCGG-GaGCuCGUGCCCgaG- -5'
29544 3' -59.6 NC_006151.1 + 65630 0.66 0.731792
Target:  5'- gGCCACGGGgucGCCCgUGAGguCGaGGgUCg -3'
miRNA:   3'- -CGGUGCUU---CGGGaGCUCguGC-CCgAG- -5'
29544 3' -59.6 NC_006151.1 + 65682 0.69 0.572612
Target:  5'- aCgGCGAGGUCCccgucCGGGCGCGGGaUCa -3'
miRNA:   3'- cGgUGCUUCGGGa----GCUCGUGCCCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.