miRNA display CGI


Results 81 - 100 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 65936 0.68 0.642699
Target:  5'- cGCCGCc-GGCCCaguccucgUCGAGCGCGGccGCgUCg -3'
miRNA:   3'- -CGGUGcuUCGGG--------AGCUCGUGCC--CG-AG- -5'
29544 3' -59.6 NC_006151.1 + 66765 0.69 0.572612
Target:  5'- cGCCGCGAcggccGCCCUCGGG-ACGgcGGCg- -3'
miRNA:   3'- -CGGUGCUu----CGGGAGCUCgUGC--CCGag -5'
29544 3' -59.6 NC_006151.1 + 67247 0.69 0.582555
Target:  5'- gGCCACGGAGCCCguguUCGAGgagaucCACGcGCg- -3'
miRNA:   3'- -CGGUGCUUCGGG----AGCUC------GUGCcCGag -5'
29544 3' -59.6 NC_006151.1 + 67478 0.66 0.712355
Target:  5'- cGCagcaGCGGGcaCCCgcacaCGAGCGCGcGGCUCg -3'
miRNA:   3'- -CGg---UGCUUc-GGGa----GCUCGUGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 67982 0.72 0.380597
Target:  5'- aGUCGCGGcGGCCCgccggcgccgCGGcCACGGGCUCg -3'
miRNA:   3'- -CGGUGCU-UCGGGa---------GCUcGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 68032 0.79 0.159996
Target:  5'- uCCAgGcGGCCCgccggcgcggCGGGCACGGGCUCg -3'
miRNA:   3'- cGGUgCuUCGGGa---------GCUCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 68440 0.78 0.176735
Target:  5'- cGCgGCGGcacaGGCgCUCGAGCACGGGgUCc -3'
miRNA:   3'- -CGgUGCU----UCGgGAGCUCGUGCCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 68890 0.68 0.592532
Target:  5'- gGCCACGucgaggacGGCCUcgCGGucGCGCGGGCg- -3'
miRNA:   3'- -CGGUGCu-------UCGGGa-GCU--CGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 69308 0.68 0.592532
Target:  5'- gGCCGcCGgcGCCacaCGuGCGCGGGCg- -3'
miRNA:   3'- -CGGU-GCuuCGGga-GCuCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 69334 0.66 0.731792
Target:  5'- cGCguCGccGCCCgCGAGCGCGGcGUa- -3'
miRNA:   3'- -CGguGCuuCGGGaGCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 71087 0.77 0.214924
Target:  5'- aCCACGgcGCCg-CGGGCGCGGGCg- -3'
miRNA:   3'- cGGUGCuuCGGgaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 71759 0.66 0.712355
Target:  5'- cGCCGCGcguGGUCCUgCGgcagcggcGGCGgGGGCUg -3'
miRNA:   3'- -CGGUGCu--UCGGGA-GC--------UCGUgCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 72418 0.67 0.662761
Target:  5'- aCCACGcGGCCCUCGcaccucuGCA-GGGC-Cg -3'
miRNA:   3'- cGGUGCuUCGGGAGCu------CGUgCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 73020 0.68 0.626623
Target:  5'- cGCUGCGAGGCCCagggauuggCGGuggcgcgguggggguGCGCGGGgUCc -3'
miRNA:   3'- -CGGUGCUUCGGGa--------GCU---------------CGUGCCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 73208 0.7 0.476324
Target:  5'- cCCGCGGgccaGGCCCgCGGGCACcugGGGCa- -3'
miRNA:   3'- cGGUGCU----UCGGGaGCUCGUG---CCCGag -5'
29544 3' -59.6 NC_006151.1 + 73415 0.68 0.619591
Target:  5'- gGCCGUGAAGCCCaCGcccagguccacguuGGCGCgGGGCUg -3'
miRNA:   3'- -CGGUGCUUCGGGaGC--------------UCGUG-CCCGAg -5'
29544 3' -59.6 NC_006151.1 + 73864 0.67 0.692655
Target:  5'- cGCCGgguaGAAGaaggccCCCUCGAGCAgcguggcgucguUGGGCUg -3'
miRNA:   3'- -CGGUg---CUUC------GGGAGCUCGU------------GCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 74601 0.66 0.760302
Target:  5'- cGCCgAUGAGGCgCCgcagggCGuGCACGuGCUCc -3'
miRNA:   3'- -CGG-UGCUUCG-GGa-----GCuCGUGCcCGAG- -5'
29544 3' -59.6 NC_006151.1 + 74773 0.69 0.582555
Target:  5'- cGCCACG-AGCCgCgCGAGCGCGcagaagguGcGCUCg -3'
miRNA:   3'- -CGGUGCuUCGG-GaGCUCGUGC--------C-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 75139 0.7 0.476324
Target:  5'- gGCgGCGcGGCCCagcgCGGgcGCACGGGCaUCa -3'
miRNA:   3'- -CGgUGCuUCGGGa---GCU--CGUGCCCG-AG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.