miRNA display CGI


Results 101 - 120 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 75234 0.66 0.721139
Target:  5'- gGCCACGuAGGCgCCgaaGGCgcacugcaccuccGCGGGCUCc -3'
miRNA:   3'- -CGGUGC-UUCG-GGagcUCG-------------UGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 76047 0.69 0.543051
Target:  5'- uCCGCGAgccGGCCCUCGuagAGCGugaaGGGCg- -3'
miRNA:   3'- cGGUGCU---UCGGGAGC---UCGUg---CCCGag -5'
29544 3' -59.6 NC_006151.1 + 76294 0.68 0.642699
Target:  5'- aGCgGCGAucgaGGCgCUUGAucauguaguuguGCACGGGCUg -3'
miRNA:   3'- -CGgUGCU----UCGgGAGCU------------CGUGCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 77001 0.69 0.549907
Target:  5'- cGCCGCGAggguGGCCCgCGAGCcguggagcgccaggACGaGGCa- -3'
miRNA:   3'- -CGGUGCU----UCGGGaGCUCG--------------UGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 77073 0.69 0.582555
Target:  5'- gGCCAgGAGGCUCaccacgugCGAGCugaagcGCGGGCg- -3'
miRNA:   3'- -CGGUgCUUCGGGa-------GCUCG------UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 78194 0.69 0.582555
Target:  5'- cGCgGCGGAcCCCuucuUCGGG-ACGGGCUCc -3'
miRNA:   3'- -CGgUGCUUcGGG----AGCUCgUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 78222 0.66 0.74139
Target:  5'- nCCACGucGCUCaCGGGCGCGcagcGGUUCg -3'
miRNA:   3'- cGGUGCuuCGGGaGCUCGUGC----CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 78325 0.73 0.326749
Target:  5'- gGCUggACGAGcGCCCcggggCGGGCGCGGGCg- -3'
miRNA:   3'- -CGG--UGCUU-CGGGa----GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 78399 0.7 0.504467
Target:  5'- gGCCACGGcGGCUCUCGGGcCGCGaGCg- -3'
miRNA:   3'- -CGGUGCU-UCGGGAGCUC-GUGCcCGag -5'
29544 3' -59.6 NC_006151.1 + 78713 0.68 0.592532
Target:  5'- cGCCGCGAcggcGCCCgUgGGGCGCGcGCUg -3'
miRNA:   3'- -CGGUGCUu---CGGG-AgCUCGUGCcCGAg -5'
29544 3' -59.6 NC_006151.1 + 81275 0.7 0.514009
Target:  5'- cGCCucgGCGggGaUCUCGGGCGCGGcGCg- -3'
miRNA:   3'- -CGG---UGCuuCgGGAGCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 81358 0.66 0.750896
Target:  5'- cGCC-CGggGCCCcggCGGGCGCcaGCg- -3'
miRNA:   3'- -CGGuGCuuCGGGa--GCUCGUGccCGag -5'
29544 3' -59.6 NC_006151.1 + 81493 0.66 0.712355
Target:  5'- uCCACGcGGCCgUCggcgaGAGCGCGGcccgcgugaGCUCg -3'
miRNA:   3'- cGGUGCuUCGGgAG-----CUCGUGCC---------CGAG- -5'
29544 3' -59.6 NC_006151.1 + 82407 0.71 0.458001
Target:  5'- cGCC-CGAgggcGGCCC-CGAgagGCGCGGGCg- -3'
miRNA:   3'- -CGGuGCU----UCGGGaGCU---CGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 82711 0.66 0.760302
Target:  5'- gGCCAgGAGGCCCgCGAGgguCAgGaGGCg- -3'
miRNA:   3'- -CGGUgCUUCGGGaGCUC---GUgC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 83090 0.66 0.760302
Target:  5'- cCCACGcguGCaCCUCGAGC--GGGCg- -3'
miRNA:   3'- cGGUGCuu-CG-GGAGCUCGugCCCGag -5'
29544 3' -59.6 NC_006151.1 + 83150 0.67 0.682728
Target:  5'- cGCCAaagaGGGuGUCCUgGAGCuCGGGgUCg -3'
miRNA:   3'- -CGGUg---CUU-CGGGAgCUCGuGCCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 83180 0.66 0.750896
Target:  5'- cGUCGCGcgggcggcaGAGCUCgUUGAGCGCGaGGCa- -3'
miRNA:   3'- -CGGUGC---------UUCGGG-AGCUCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 83429 0.66 0.760302
Target:  5'- cGCCGgGggGCuCCcCGGGCAgCGuGGC-Cg -3'
miRNA:   3'- -CGGUgCuuCG-GGaGCUCGU-GC-CCGaG- -5'
29544 3' -59.6 NC_006151.1 + 83556 0.7 0.523623
Target:  5'- cGUCAucuCGGgcgGGCCCUCGAcCGCGGGCcCg -3'
miRNA:   3'- -CGGU---GCU---UCGGGAGCUcGUGCCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.