miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 134259 0.67 0.686704
Target:  5'- cGCgGCGAggugcaggcgauuguAGCCC-CGGGCcgcccACGGGCg- -3'
miRNA:   3'- -CGgUGCU---------------UCGGGaGCUCG-----UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 133460 0.71 0.422529
Target:  5'- gGCCccgguCGAGGCCCgCGAGgcggcCGCGGGCgUCa -3'
miRNA:   3'- -CGGu----GCUUCGGGaGCUC-----GUGCCCG-AG- -5'
29544 3' -59.6 NC_006151.1 + 132574 0.69 0.543051
Target:  5'- uCCACGGccGGgaCUCGcGGCAUGGGCUCc -3'
miRNA:   3'- cGGUGCU--UCggGAGC-UCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 131539 0.66 0.74139
Target:  5'- uGCUcuuGCG-AGCgCCUCGGgcgccGCACGGGCc- -3'
miRNA:   3'- -CGG---UGCuUCG-GGAGCU-----CGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 130839 0.7 0.504467
Target:  5'- cGgCGCGGAGUCgUCGccgucggcGGCGCGGGCg- -3'
miRNA:   3'- -CgGUGCUUCGGgAGC--------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 130493 0.75 0.2655
Target:  5'- aGCgCGCGgcGCCacacgccgcgcguCUCGGGCGCGGGCgUCg -3'
miRNA:   3'- -CG-GUGCuuCGG-------------GAGCUCGUGCCCG-AG- -5'
29544 3' -59.6 NC_006151.1 + 130399 0.75 0.259975
Target:  5'- gGCCAgCGccucGCCCgCGAGCGCGGGCg- -3'
miRNA:   3'- -CGGU-GCuu--CGGGaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 130266 0.69 0.582555
Target:  5'- gGCCggcGCGcGGCCC-CGAGgcCGCGGGCg- -3'
miRNA:   3'- -CGG---UGCuUCGGGaGCUC--GUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 129807 0.73 0.326749
Target:  5'- -gCAUGAGGCCCgUGAGCGCGGaGCg- -3'
miRNA:   3'- cgGUGCUUCGGGaGCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 129477 0.7 0.523623
Target:  5'- aGCC-CGuccAGGUCCUCGgagggcAGCGCGGGCg- -3'
miRNA:   3'- -CGGuGC---UUCGGGAGC------UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 129277 0.71 0.422529
Target:  5'- uCCACGAAGCgcggcgcguuCCUCGGGCGCGGcggaGCa- -3'
miRNA:   3'- cGGUGCUUCG----------GGAGCUCGUGCC----CGag -5'
29544 3' -59.6 NC_006151.1 + 128789 0.66 0.731792
Target:  5'- gGCCuCGGucGCCUcggCGAGCGCGGcGCg- -3'
miRNA:   3'- -CGGuGCUu-CGGGa--GCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 128538 0.7 0.514009
Target:  5'- gGCCACGGcgGGCCCgCcGGCGCGGuGC-Cg -3'
miRNA:   3'- -CGGUGCU--UCGGGaGcUCGUGCC-CGaG- -5'
29544 3' -59.6 NC_006151.1 + 125289 0.7 0.514009
Target:  5'- cGgCACGggGCaCCUgCGcaucacCACGGGCUCg -3'
miRNA:   3'- -CgGUGCuuCG-GGA-GCuc----GUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 125221 0.71 0.467116
Target:  5'- cCCGCGGccGCCCgUCGGGCcCGGcGCUCc -3'
miRNA:   3'- cGGUGCUu-CGGG-AGCUCGuGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 125090 0.67 0.682728
Target:  5'- gGCC-CGAGGUguaCCUCGcccGCGgGGGCUUc -3'
miRNA:   3'- -CGGuGCUUCG---GGAGCu--CGUgCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 123254 0.69 0.552854
Target:  5'- uCUGCGAGGCCgCcgCGcGCGCGGGCa- -3'
miRNA:   3'- cGGUGCUUCGG-Ga-GCuCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 122897 0.8 0.137563
Target:  5'- aCCGCGAcGCCCUCGAGCGCcuccucgaGGGCg- -3'
miRNA:   3'- cGGUGCUuCGGGAGCUCGUG--------CCCGag -5'
29544 3' -59.6 NC_006151.1 + 122745 0.67 0.682728
Target:  5'- cCCGCGcGGCCg-CGAGCucgacaucaucgACGGGCUg -3'
miRNA:   3'- cGGUGCuUCGGgaGCUCG------------UGCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 122350 0.7 0.476324
Target:  5'- gGCCAaGAAccuGCCgCaCGuGCACGGGCUCg -3'
miRNA:   3'- -CGGUgCUU---CGG-GaGCuCGUGCCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.