miRNA display CGI


Results 61 - 80 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 113319 0.66 0.712355
Target:  5'- cGCCACGcugGGGCCCgugCuGGCGCuGGCg- -3'
miRNA:   3'- -CGGUGC---UUCGGGa--GcUCGUGcCCGag -5'
29544 3' -59.6 NC_006151.1 + 111318 0.74 0.291872
Target:  5'- gGCCGCGu-GCCC--GGGCACGGGCg- -3'
miRNA:   3'- -CGGUGCuuCGGGagCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 111043 0.68 0.622604
Target:  5'- uCCACGGGcagggcGCCCUCGAGCgucuGCGcGGUgaUCg -3'
miRNA:   3'- cGGUGCUU------CGGGAGCUCG----UGC-CCG--AG- -5'
29544 3' -59.6 NC_006151.1 + 106699 0.7 0.485621
Target:  5'- cGCCgGCGAccuguacgcGCCCgUGGGCACGGGCa- -3'
miRNA:   3'- -CGG-UGCUu--------CGGGaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 106654 0.66 0.74139
Target:  5'- cGCCGCGgcGCaCgugcgCGAGgcCGCGGcGCUCg -3'
miRNA:   3'- -CGGUGCuuCGgGa----GCUC--GUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 106383 0.69 0.543051
Target:  5'- cGCCGCGgcGCCCgcuGcGCgACGGGCa- -3'
miRNA:   3'- -CGGUGCuuCGGGag-CuCG-UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 106141 0.73 0.349115
Target:  5'- gGCCACGAcGCUCUCGcGCACcuucgGGGCg- -3'
miRNA:   3'- -CGGUGCUuCGGGAGCuCGUG-----CCCGag -5'
29544 3' -59.6 NC_006151.1 + 105070 0.67 0.692655
Target:  5'- cGCC-CGAgcuggacgugcaGGCCgUCGAGUggcugcaccagGCGcGGCUCa -3'
miRNA:   3'- -CGGuGCU------------UCGGgAGCUCG-----------UGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 104928 0.77 0.204759
Target:  5'- cGCgACGggGCCCUCGAGCugGccaacCUCa -3'
miRNA:   3'- -CGgUGCuuCGGGAGCUCGugCcc---GAG- -5'
29544 3' -59.6 NC_006151.1 + 104527 0.67 0.652738
Target:  5'- cGCCGCGGcuuCCC-CGAGUACGaGGC-Cg -3'
miRNA:   3'- -CGGUGCUuc-GGGaGCUCGUGC-CCGaG- -5'
29544 3' -59.6 NC_006151.1 + 104160 0.74 0.312438
Target:  5'- cGCCGCGGAGCugcgccccgCCgcCGAGCGCGcGCUCg -3'
miRNA:   3'- -CGGUGCUUCG---------GGa-GCUCGUGCcCGAG- -5'
29544 3' -59.6 NC_006151.1 + 103456 0.75 0.285256
Target:  5'- gGCCAC---GCCCgugcCGGGCACGGuGCUCg -3'
miRNA:   3'- -CGGUGcuuCGGGa---GCUCGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 103274 0.69 0.543051
Target:  5'- gGCCACGugcuGAGCCaggagaCGcGCGCGcGGCUCg -3'
miRNA:   3'- -CGGUGC----UUCGGga----GCuCGUGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 102584 0.67 0.682728
Target:  5'- cGCgCGCGAGuCCCgCGAGUcgcaGCGGGCg- -3'
miRNA:   3'- -CG-GUGCUUcGGGaGCUCG----UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 102446 0.68 0.622604
Target:  5'- gGCgCugGAcGCgCUCGAGUccGgGGGCUCc -3'
miRNA:   3'- -CG-GugCUuCGgGAGCUCG--UgCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 101515 0.66 0.760302
Target:  5'- gGCCACGGgcagaucacccaGGCCUUCGuGGCGCGccugcgcccGGCg- -3'
miRNA:   3'- -CGGUGCU------------UCGGGAGC-UCGUGC---------CCGag -5'
29544 3' -59.6 NC_006151.1 + 100899 0.76 0.220166
Target:  5'- cGCCGCGGcgcgcgcgcGCCCgacgacgCGAGCGCGGGCg- -3'
miRNA:   3'- -CGGUGCUu--------CGGGa------GCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 100651 0.71 0.440061
Target:  5'- cGCCGCGccGUCgaCGAGCGCGGcgugcuggcGCUCg -3'
miRNA:   3'- -CGGUGCuuCGGgaGCUCGUGCC---------CGAG- -5'
29544 3' -59.6 NC_006151.1 + 100313 0.66 0.712355
Target:  5'- cGCC-CGGggagggugGGCCCUgccUGGGCACGuGGCg- -3'
miRNA:   3'- -CGGuGCU--------UCGGGA---GCUCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 100221 0.68 0.632652
Target:  5'- gGCCGCGGGcGCCgUggcCGAGCGCGuGGUg- -3'
miRNA:   3'- -CGGUGCUU-CGGgA---GCUCGUGC-CCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.