miRNA display CGI


Results 81 - 100 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 100074 0.68 0.622604
Target:  5'- gGCCGcCGAGGUgCUCGAGgCGCcGGCg- -3'
miRNA:   3'- -CGGU-GCUUCGgGAGCUC-GUGcCCGag -5'
29544 3' -59.6 NC_006151.1 + 99713 0.75 0.272381
Target:  5'- cCCAUGGAggcGCCgaCGAGCGCGGcGCUCg -3'
miRNA:   3'- cGGUGCUU---CGGgaGCUCGUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 99631 0.77 0.204759
Target:  5'- cGCgCGCGAGGCCCUCaa-CACGuGGCUCg -3'
miRNA:   3'- -CG-GUGCUUCGGGAGcucGUGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 99545 0.69 0.572612
Target:  5'- cCCACGGAGCacgUGGGCGCGGcGCg- -3'
miRNA:   3'- cGGUGCUUCGggaGCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 99234 0.68 0.642699
Target:  5'- cGCCGCugcaggucgugGAGGCgCUCGugacCGCGGGCUUc -3'
miRNA:   3'- -CGGUG-----------CUUCGgGAGCuc--GUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 99016 0.75 0.26861
Target:  5'- gGCCGuCGAggugcgcgucuccgcGGCCCUCGcGCACGGGgaCg -3'
miRNA:   3'- -CGGU-GCU---------------UCGGGAGCuCGUGCCCgaG- -5'
29544 3' -59.6 NC_006151.1 + 98636 0.77 0.190294
Target:  5'- cGCCuucgACGAGGCCCUggCGGGCGCGcGCUCc -3'
miRNA:   3'- -CGG----UGCUUCGGGA--GCUCGUGCcCGAG- -5'
29544 3' -59.6 NC_006151.1 + 98547 0.68 0.642699
Target:  5'- aCCACGGccGCCCUCaccgaGGC-CGGGCUg -3'
miRNA:   3'- cGGUGCUu-CGGGAGc----UCGuGCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 98343 0.85 0.063136
Target:  5'- gGCCGCGAGacGCCCgcgggCGuGCGCGGGCUCu -3'
miRNA:   3'- -CGGUGCUU--CGGGa----GCuCGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 98046 0.7 0.514009
Target:  5'- -gCGCGAgcaccaccAGCCC-CGGGCGCucggccugGGGCUCg -3'
miRNA:   3'- cgGUGCU--------UCGGGaGCUCGUG--------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 97790 0.72 0.405422
Target:  5'- gGUCGCGAAGCgCUCaGGCGCGcGGC-Cg -3'
miRNA:   3'- -CGGUGCUUCGgGAGcUCGUGC-CCGaG- -5'
29544 3' -59.6 NC_006151.1 + 97436 0.68 0.636671
Target:  5'- gGCCAgGAggaAGCUgagggcgucgccgagCUCGGGCAgGcGGCUCa -3'
miRNA:   3'- -CGGUgCU---UCGG---------------GAGCUCGUgC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 97252 0.66 0.731792
Target:  5'- gGCCGCGcaugucggGGGCCCacaCGGGCagcgccucggcgGCGGGCg- -3'
miRNA:   3'- -CGGUGC--------UUCGGGa--GCUCG------------UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 96589 0.76 0.248035
Target:  5'- cGgCGCGAGGCgC-CGGGCGCGGGCg- -3'
miRNA:   3'- -CgGUGCUUCGgGaGCUCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 94220 0.68 0.612564
Target:  5'- gGCgAagagGAAGCgguagaaCUCGAGCuCGGGCUCg -3'
miRNA:   3'- -CGgUg---CUUCGg------GAGCUCGuGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 93552 0.71 0.422529
Target:  5'- cGCCAUGGgaaAGUCCgccgCGGGgGCGGGCg- -3'
miRNA:   3'- -CGGUGCU---UCGGGa---GCUCgUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 93054 0.68 0.622604
Target:  5'- cCCGCG-GGCCaCUcCGucCGCGGGCUCc -3'
miRNA:   3'- cGGUGCuUCGG-GA-GCucGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 92735 0.66 0.760302
Target:  5'- gGCCAUGcucacGCCggCGcGGCACGGGCa- -3'
miRNA:   3'- -CGGUGCuu---CGGgaGC-UCGUGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 92583 0.72 0.388759
Target:  5'- gGCCGCGAgguGGCCCcCGAGgACGucaaGCUCa -3'
miRNA:   3'- -CGGUGCU---UCGGGaGCUCgUGCc---CGAG- -5'
29544 3' -59.6 NC_006151.1 + 92454 0.67 0.652738
Target:  5'- uGCCGCGAcGUCCUCGcgAGcCugGGGgUg -3'
miRNA:   3'- -CGGUGCUuCGGGAGC--UC-GugCCCgAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.