Results 101 - 120 of 235 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29544 | 3' | -59.6 | NC_006151.1 | + | 63890 | 0.67 | 0.699576 |
Target: 5'- cGCguCGggGCgCUCGAGCaggcgcgcguacgcGCgcgccgugGGGCUCg -3' miRNA: 3'- -CGguGCuuCGgGAGCUCG--------------UG--------CCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 105070 | 0.67 | 0.692655 |
Target: 5'- cGCC-CGAgcuggacgugcaGGCCgUCGAGUggcugcaccagGCGcGGCUCa -3' miRNA: 3'- -CGGuGCU------------UCGGgAGCUCG-----------UGC-CCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 137118 | 0.67 | 0.692655 |
Target: 5'- cGCCugGggGCgCgCGAcgGCGCGGcGCg- -3' miRNA: 3'- -CGGugCuuCGgGaGCU--CGUGCC-CGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 64194 | 0.67 | 0.692655 |
Target: 5'- cCCGCGAucGCCC-CGGGCAgguccggcgUGGGCg- -3' miRNA: 3'- cGGUGCUu-CGGGaGCUCGU---------GCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 55519 | 0.67 | 0.692655 |
Target: 5'- gGCCACGAGGUCaUCGAcaucacgcgcGcCAUGGGCg- -3' miRNA: 3'- -CGGUGCUUCGGgAGCU----------C-GUGCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 100313 | 0.66 | 0.712355 |
Target: 5'- cGCC-CGGggagggugGGCCCUgccUGGGCACGuGGCg- -3' miRNA: 3'- -CGGuGCU--------UCGGGA---GCUCGUGC-CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 50023 | 0.66 | 0.712355 |
Target: 5'- gGCCcgcGCGgcGCCCcCGGGCGCGGcCa- -3' miRNA: 3'- -CGG---UGCuuCGGGaGCUCGUGCCcGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 69334 | 0.66 | 0.731792 |
Target: 5'- cGCguCGccGCCCgCGAGCGCGGcGUa- -3' miRNA: 3'- -CGguGCuuCGGGaGCUCGUGCC-CGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 11319 | 0.66 | 0.722111 |
Target: 5'- cGCCGCGAuaccGCgCgggCGAuaccGCGCGGGC-Cg -3' miRNA: 3'- -CGGUGCUu---CGgGa--GCU----CGUGCCCGaG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 140364 | 0.66 | 0.722111 |
Target: 5'- cGCC-CGc-GUCgUCGAGCGC-GGCUCg -3' miRNA: 3'- -CGGuGCuuCGGgAGCUCGUGcCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 91111 | 0.66 | 0.722111 |
Target: 5'- gGCCGCGgcGCCCUucgccacggcggCGAGCuuggccaccuGgGGGCg- -3' miRNA: 3'- -CGGUGCuuCGGGA------------GCUCG----------UgCCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 118900 | 0.66 | 0.722111 |
Target: 5'- gGCCGcCGgcGgCCUCGAGCGCcgcauGGCg- -3' miRNA: 3'- -CGGU-GCuuCgGGAGCUCGUGc----CCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 57701 | 0.66 | 0.722111 |
Target: 5'- cGCCgaaGAAGgCCaCGAGCGCcGGCUUg -3' miRNA: 3'- -CGGug-CUUCgGGaGCUCGUGcCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 56121 | 0.66 | 0.722111 |
Target: 5'- cGCCGgGGAGgCCUUc--CGCGGGUUCg -3' miRNA: 3'- -CGGUgCUUCgGGAGcucGUGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 75234 | 0.66 | 0.721139 |
Target: 5'- gGCCACGuAGGCgCCgaaGGCgcacugcaccuccGCGGGCUCc -3' miRNA: 3'- -CGGUGC-UUCG-GGagcUCG-------------UGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 26568 | 0.66 | 0.721139 |
Target: 5'- aGCC-CG-AGCCCUcuccgucCGAGCcguccucgGgGGGCUCa -3' miRNA: 3'- -CGGuGCuUCGGGA-------GCUCG--------UgCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 122143 | 0.66 | 0.712355 |
Target: 5'- gGCCguggACGAGuUCCUCGcgcgcacgaucGGCgGCGGGCUCg -3' miRNA: 3'- -CGG----UGCUUcGGGAGC-----------UCG-UGCCCGAG- -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 113319 | 0.66 | 0.712355 |
Target: 5'- cGCCACGcugGGGCCCgugCuGGCGCuGGCg- -3' miRNA: 3'- -CGGUGC---UUCGGGa--GcUCGUGcCCGag -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 71759 | 0.66 | 0.712355 |
Target: 5'- cGCCGCGcguGGUCCUgCGgcagcggcGGCGgGGGCUg -3' miRNA: 3'- -CGGUGCu--UCGGGA-GC--------UCGUgCCCGAg -5' |
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29544 | 3' | -59.6 | NC_006151.1 | + | 67478 | 0.66 | 0.712355 |
Target: 5'- cGCagcaGCGGGcaCCCgcacaCGAGCGCGcGGCUCg -3' miRNA: 3'- -CGg---UGCUUc-GGGa----GCUCGUGC-CCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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