miRNA display CGI


Results 121 - 140 of 235 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 61437 0.67 0.682728
Target:  5'- cGCCGCGgcGCCCgcccgCGuccgccgccauGUGCGGGC-Cg -3'
miRNA:   3'- -CGGUGCuuCGGGa----GCu----------CGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 37950 0.67 0.682728
Target:  5'- gGCCGCGu-GCCCcgCGAGCugGcGGaCg- -3'
miRNA:   3'- -CGGUGCuuCGGGa-GCUCGugC-CC-Gag -5'
29544 3' -59.6 NC_006151.1 + 121207 0.67 0.702534
Target:  5'- cGCgCACGcAGCaCCUgGAGCccgacgacugGCGGGCg- -3'
miRNA:   3'- -CG-GUGCuUCG-GGAgCUCG----------UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 5337 0.67 0.702534
Target:  5'- gGCCGCGGcggagggcGCCCUCuccGGCGCGGcGC-Cg -3'
miRNA:   3'- -CGGUGCUu-------CGGGAGc--UCGUGCC-CGaG- -5'
29544 3' -59.6 NC_006151.1 + 142141 0.67 0.702534
Target:  5'- cGCC-CGAuGCCUgCGccGGCGCaggGGGCUCg -3'
miRNA:   3'- -CGGuGCUuCGGGaGC--UCGUG---CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 57701 0.66 0.722111
Target:  5'- cGCCgaaGAAGgCCaCGAGCGCcGGCUUg -3'
miRNA:   3'- -CGGug-CUUCgGGaGCUCGUGcCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 56121 0.66 0.722111
Target:  5'- cGCCGgGGAGgCCUUc--CGCGGGUUCg -3'
miRNA:   3'- -CGGUgCUUCgGGAGcucGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 75234 0.66 0.721139
Target:  5'- gGCCACGuAGGCgCCgaaGGCgcacugcaccuccGCGGGCUCc -3'
miRNA:   3'- -CGGUGC-UUCG-GGagcUCG-------------UGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 26568 0.66 0.721139
Target:  5'- aGCC-CG-AGCCCUcuccgucCGAGCcguccucgGgGGGCUCa -3'
miRNA:   3'- -CGGuGCuUCGGGA-------GCUCG--------UgCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 122143 0.66 0.712355
Target:  5'- gGCCguggACGAGuUCCUCGcgcgcacgaucGGCgGCGGGCUCg -3'
miRNA:   3'- -CGG----UGCUUcGGGAGC-----------UCG-UGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 113319 0.66 0.712355
Target:  5'- cGCCACGcugGGGCCCgugCuGGCGCuGGCg- -3'
miRNA:   3'- -CGGUGC---UUCGGGa--GcUCGUGcCCGag -5'
29544 3' -59.6 NC_006151.1 + 71759 0.66 0.712355
Target:  5'- cGCCGCGcguGGUCCUgCGgcagcggcGGCGgGGGCUg -3'
miRNA:   3'- -CGGUGCu--UCGGGA-GC--------UCGUgCCCGAg -5'
29544 3' -59.6 NC_006151.1 + 67478 0.66 0.712355
Target:  5'- cGCagcaGCGGGcaCCCgcacaCGAGCGCGcGGCUCg -3'
miRNA:   3'- -CGg---UGCUUc-GGGa----GCUCGUGC-CCGAG- -5'
29544 3' -59.6 NC_006151.1 + 50023 0.66 0.712355
Target:  5'- gGCCcgcGCGgcGCCCcCGGGCGCGGcCa- -3'
miRNA:   3'- -CGG---UGCuuCGGGaGCUCGUGCCcGag -5'
29544 3' -59.6 NC_006151.1 + 100313 0.66 0.712355
Target:  5'- cGCC-CGGggagggugGGCCCUgccUGGGCACGuGGCg- -3'
miRNA:   3'- -CGGuGCU--------UCGGGA---GCUCGUGC-CCGag -5'
29544 3' -59.6 NC_006151.1 + 81493 0.66 0.712355
Target:  5'- uCCACGcGGCCgUCggcgaGAGCGCGGcccgcgugaGCUCg -3'
miRNA:   3'- cGGUGCuUCGGgAG-----CUCGUGCC---------CGAG- -5'
29544 3' -59.6 NC_006151.1 + 64740 0.66 0.711376
Target:  5'- gGCCACGAgcucgagcagcggGGCCaC-CGuGCGCGGGggCu -3'
miRNA:   3'- -CGGUGCU-------------UCGG-GaGCuCGUGCCCgaG- -5'
29544 3' -59.6 NC_006151.1 + 52485 0.66 0.711376
Target:  5'- cGCCGUGAcGgCCUCGGGCGCcagcccgGGGCg- -3'
miRNA:   3'- -CGGUGCUuCgGGAGCUCGUG-------CCCGag -5'
29544 3' -59.6 NC_006151.1 + 38581 0.67 0.70647
Target:  5'- cGCC-CGggGCCCgccgcccCGGGgACggcgaggaggacgagGGGCUCu -3'
miRNA:   3'- -CGGuGCuuCGGGa------GCUCgUG---------------CCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 88255 0.67 0.70647
Target:  5'- aCgGCGAAGCCCUCGAcgaaGCGCaccgagaccgccgccGGGUg- -3'
miRNA:   3'- cGgUGCUUCGGGAGCU----CGUG---------------CCCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.