miRNA display CGI


Results 21 - 40 of 235 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29544 3' -59.6 NC_006151.1 + 86099 0.66 0.74139
Target:  5'- cGCCAUGggGCCCgu--GUACGuguccGGCUa -3'
miRNA:   3'- -CGGUGCuuCGGGagcuCGUGC-----CCGAg -5'
29544 3' -59.6 NC_006151.1 + 106654 0.66 0.74139
Target:  5'- cGCCGCGgcGCaCgugcgCGAGgcCGCGGcGCUCg -3'
miRNA:   3'- -CGGUGCuuCGgGa----GCUC--GUGCC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 69334 0.66 0.731792
Target:  5'- cGCguCGccGCCCgCGAGCGCGGcGUa- -3'
miRNA:   3'- -CGguGCuuCGGGaGCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 97252 0.66 0.731792
Target:  5'- gGCCGCGcaugucggGGGCCCacaCGGGCagcgccucggcgGCGGGCg- -3'
miRNA:   3'- -CGGUGC--------UUCGGGa--GCUCG------------UGCCCGag -5'
29544 3' -59.6 NC_006151.1 + 114243 0.66 0.731792
Target:  5'- gGCCGCGcGGgacCCCUCgGAGCGCgcccucgaggaGGuGCUCg -3'
miRNA:   3'- -CGGUGCuUC---GGGAG-CUCGUG-----------CC-CGAG- -5'
29544 3' -59.6 NC_006151.1 + 128789 0.66 0.731792
Target:  5'- gGCCuCGGucGCCUcggCGAGCGCGGcGCg- -3'
miRNA:   3'- -CGGuGCUu-CGGGa--GCUCGUGCC-CGag -5'
29544 3' -59.6 NC_006151.1 + 137269 0.66 0.731792
Target:  5'- cGCC-CGguGCCCgCGGGCACGcucgaGGCg- -3'
miRNA:   3'- -CGGuGCuuCGGGaGCUCGUGC-----CCGag -5'
29544 3' -59.6 NC_006151.1 + 30571 0.66 0.731792
Target:  5'- cGCCGuccCGcGGCCCcgUCGGGCGCaGGGaUCg -3'
miRNA:   3'- -CGGU---GCuUCGGG--AGCUCGUG-CCCgAG- -5'
29544 3' -59.6 NC_006151.1 + 35580 0.66 0.731792
Target:  5'- gGCCAUu-GGUCCgcuuaccUGGGgGCGGGCUCu -3'
miRNA:   3'- -CGGUGcuUCGGGa------GCUCgUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 65630 0.66 0.731792
Target:  5'- gGCCACGGGgucGCCCgUGAGguCGaGGgUCg -3'
miRNA:   3'- -CGGUGCUU---CGGGaGCUCguGC-CCgAG- -5'
29544 3' -59.6 NC_006151.1 + 134317 0.66 0.731792
Target:  5'- cGCCGCu--GCgCCUCGcGC-CGGGCaUCg -3'
miRNA:   3'- -CGGUGcuuCG-GGAGCuCGuGCCCG-AG- -5'
29544 3' -59.6 NC_006151.1 + 134721 0.66 0.731792
Target:  5'- cCCGCGuGGCCUUC--GCGCGGGaCUUu -3'
miRNA:   3'- cGGUGCuUCGGGAGcuCGUGCCC-GAG- -5'
29544 3' -59.6 NC_006151.1 + 56121 0.66 0.722111
Target:  5'- cGCCGgGGAGgCCUUc--CGCGGGUUCg -3'
miRNA:   3'- -CGGUgCUUCgGGAGcucGUGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 57701 0.66 0.722111
Target:  5'- cGCCgaaGAAGgCCaCGAGCGCcGGCUUg -3'
miRNA:   3'- -CGGug-CUUCgGGaGCUCGUGcCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 118900 0.66 0.722111
Target:  5'- gGCCGcCGgcGgCCUCGAGCGCcgcauGGCg- -3'
miRNA:   3'- -CGGU-GCuuCgGGAGCUCGUGc----CCGag -5'
29544 3' -59.6 NC_006151.1 + 91111 0.66 0.722111
Target:  5'- gGCCGCGgcGCCCUucgccacggcggCGAGCuuggccaccuGgGGGCg- -3'
miRNA:   3'- -CGGUGCuuCGGGA------------GCUCG----------UgCCCGag -5'
29544 3' -59.6 NC_006151.1 + 140364 0.66 0.722111
Target:  5'- cGCC-CGc-GUCgUCGAGCGC-GGCUCg -3'
miRNA:   3'- -CGGuGCuuCGGgAGCUCGUGcCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 11319 0.66 0.722111
Target:  5'- cGCCGCGAuaccGCgCgggCGAuaccGCGCGGGC-Cg -3'
miRNA:   3'- -CGGUGCUu---CGgGa--GCU----CGUGCCCGaG- -5'
29544 3' -59.6 NC_006151.1 + 75234 0.66 0.721139
Target:  5'- gGCCACGuAGGCgCCgaaGGCgcacugcaccuccGCGGGCUCc -3'
miRNA:   3'- -CGGUGC-UUCG-GGagcUCG-------------UGCCCGAG- -5'
29544 3' -59.6 NC_006151.1 + 26568 0.66 0.721139
Target:  5'- aGCC-CG-AGCCCUcuccgucCGAGCcguccucgGgGGGCUCa -3'
miRNA:   3'- -CGGuGCuUCGGGA-------GCUCG--------UgCCCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.