miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29545 3' -55.3 NC_006151.1 + 73227 0.66 0.919715
Target:  5'- gGCAccUGggGCAGcaucuggccgaAGaCGGGCACgggCGCCa -3'
miRNA:   3'- -CGU--ACaaCGUC-----------UC-GUCCGUGa--GCGGc -5'
29545 3' -55.3 NC_006151.1 + 19258 0.66 0.913862
Target:  5'- cGCGUGgaaGCGGGGCucguGGCGCgcgggGCCc -3'
miRNA:   3'- -CGUACaa-CGUCUCGu---CCGUGag---CGGc -5'
29545 3' -55.3 NC_006151.1 + 3248 0.66 0.913862
Target:  5'- cGCGgcg-GCGGAGCgGGGCGC-CGCgGc -3'
miRNA:   3'- -CGUacaaCGUCUCG-UCCGUGaGCGgC- -5'
29545 3' -55.3 NC_006151.1 + 66945 0.66 0.913862
Target:  5'- gGCAaag-GCGGcGGCGGGCGCggcaCGCUGg -3'
miRNA:   3'- -CGUacaaCGUC-UCGUCCGUGa---GCGGC- -5'
29545 3' -55.3 NC_006151.1 + 117297 0.66 0.907763
Target:  5'- ------cGCGcGAGCugcucGGCGCUCGCCa -3'
miRNA:   3'- cguacaaCGU-CUCGu----CCGUGAGCGGc -5'
29545 3' -55.3 NC_006151.1 + 19452 0.66 0.907763
Target:  5'- cGCGcUGgagccGCGGcaccucgggcGGCAGGUAgUCGCCGa -3'
miRNA:   3'- -CGU-ACaa---CGUC----------UCGUCCGUgAGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 122386 0.66 0.90714
Target:  5'- gGCGcGccGCGGGcGCGcgcuggcGGCGCUCGCCGc -3'
miRNA:   3'- -CGUaCaaCGUCU-CGU-------CCGUGAGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 55388 0.66 0.901421
Target:  5'- aGCAggagGUgcggcgccUGCGcGAGCAGGCccuGCgCGCCGc -3'
miRNA:   3'- -CGUa---CA--------ACGU-CUCGUCCG---UGaGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 111355 0.66 0.901421
Target:  5'- cGgAUGggcgcGCGGGGCgaGGGCccCUCGCCGu -3'
miRNA:   3'- -CgUACaa---CGUCUCG--UCCGu-GAGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 74741 0.66 0.901421
Target:  5'- uGCGUGUUGCGccAGUAGcucuggauGCACUgCGCCa -3'
miRNA:   3'- -CGUACAACGUc-UCGUC--------CGUGA-GCGGc -5'
29545 3' -55.3 NC_006151.1 + 62050 0.66 0.901421
Target:  5'- cGCGUG--GCGGuGCAcGCGCgCGCCGu -3'
miRNA:   3'- -CGUACaaCGUCuCGUcCGUGaGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 105424 0.66 0.900774
Target:  5'- uCGUGggGCgcaucgAGAGCAaguacucGGCGCgCGCCGg -3'
miRNA:   3'- cGUACaaCG------UCUCGU-------CCGUGaGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 52389 0.66 0.894839
Target:  5'- cGCG-GggGC--GGCGGGCGC-CGCCGc -3'
miRNA:   3'- -CGUaCaaCGucUCGUCCGUGaGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 54704 0.66 0.887324
Target:  5'- aGCGUGcUGgGccagggccuggacGAGguGGCcgaGCUCGCCGa -3'
miRNA:   3'- -CGUACaACgU-------------CUCguCCG---UGAGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 100720 0.67 0.880966
Target:  5'- ------cGCgaGGAGCAGGCGC-CGCCc -3'
miRNA:   3'- cguacaaCG--UCUCGUCCGUGaGCGGc -5'
29545 3' -55.3 NC_006151.1 + 94836 0.67 0.880248
Target:  5'- aCAUGUUGguGAagGUGGGCGagaagccCUCGCUGc -3'
miRNA:   3'- cGUACAACguCU--CGUCCGU-------GAGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 74568 0.67 0.876623
Target:  5'- ---gGUUGCccAGCGGGUccccgggcagcgugaACUCGCCGa -3'
miRNA:   3'- cguaCAACGucUCGUCCG---------------UGAGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 16952 0.67 0.866177
Target:  5'- gGCA---UGCAGGGCcucgucCACUCGCCGg -3'
miRNA:   3'- -CGUacaACGUCUCGucc---GUGAGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 103331 0.67 0.865415
Target:  5'- cGCAcgcUGgUGCAGgcggcgcAGCAGcGCGC-CGCCGa -3'
miRNA:   3'- -CGU---ACaACGUC-------UCGUC-CGUGaGCGGC- -5'
29545 3' -55.3 NC_006151.1 + 106391 0.67 0.861569
Target:  5'- cGCccGcUGCGcgacGGGCAGGCGCuguucacgcugcgcgUCGCCGa -3'
miRNA:   3'- -CGuaCaACGU----CUCGUCCGUG---------------AGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.