miRNA display CGI


Results 1 - 20 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29545 5' -60.6 NC_006151.1 + 118110 0.66 0.714994
Target:  5'- cGCGaccuGCUgGCGCugcuCGUgGCgcgCAGCGCCg -3'
miRNA:   3'- aCGC----CGG-CGCGu---GCA-CGaa-GUCGCGG- -5'
29545 5' -60.6 NC_006151.1 + 23299 0.66 0.714994
Target:  5'- aGCGGaagaUGUGCACGUcGUaguagUCGGCGUa -3'
miRNA:   3'- aCGCCg---GCGCGUGCA-CGa----AGUCGCGg -5'
29545 5' -60.6 NC_006151.1 + 36020 0.66 0.714994
Target:  5'- gGCGGCaGC-CAgG-GCUccCGGCGCCg -3'
miRNA:   3'- aCGCCGgCGcGUgCaCGAa-GUCGCGG- -5'
29545 5' -60.6 NC_006151.1 + 53896 0.66 0.714994
Target:  5'- cGCGGCgaaGgGCA---GCUcCAGCGCCu -3'
miRNA:   3'- aCGCCGg--CgCGUgcaCGAaGUCGCGG- -5'
29545 5' -60.6 NC_006151.1 + 61344 0.66 0.714994
Target:  5'- aGCGGCUGCGCACcacgGCcgggaGGuCGCa -3'
miRNA:   3'- aCGCCGGCGCGUGca--CGaag--UC-GCGg -5'
29545 5' -60.6 NC_006151.1 + 63906 0.66 0.714994
Target:  5'- aGCaGGCgCGCGUACGcGC----GCGCCg -3'
miRNA:   3'- aCG-CCG-GCGCGUGCaCGaaguCGCGG- -5'
29545 5' -60.6 NC_006151.1 + 82992 0.66 0.714994
Target:  5'- cUGC-GCCGC-CACG-GCcgCGGCGCa -3'
miRNA:   3'- -ACGcCGGCGcGUGCaCGaaGUCGCGg -5'
29545 5' -60.6 NC_006151.1 + 85077 0.66 0.714994
Target:  5'- cUGCGGgCGCcuGUACGUGggcaaccggcaCUacUCGGCGCUc -3'
miRNA:   3'- -ACGCCgGCG--CGUGCAC-----------GA--AGUCGCGG- -5'
29545 5' -60.6 NC_006151.1 + 104478 0.66 0.714994
Target:  5'- gGCGGaCaugGCGCACGUGCcc---CGCCu -3'
miRNA:   3'- aCGCC-Gg--CGCGUGCACGaagucGCGG- -5'
29545 5' -60.6 NC_006151.1 + 7635 0.66 0.714994
Target:  5'- cGCGGucgccccacCCGCGCcuCGcGC-UCGGCGCg -3'
miRNA:   3'- aCGCC---------GGCGCGu-GCaCGaAGUCGCGg -5'
29545 5' -60.6 NC_006151.1 + 84317 0.66 0.714994
Target:  5'- cGCgauGGCCGCGaC-CGUGCg-CGGCcucGCCg -3'
miRNA:   3'- aCG---CCGGCGC-GuGCACGaaGUCG---CGG- -5'
29545 5' -60.6 NC_006151.1 + 138005 0.66 0.714994
Target:  5'- gGCGcacGCCGUcacGCGCGUGCUgcaCAGCcUCg -3'
miRNA:   3'- aCGC---CGGCG---CGUGCACGAa--GUCGcGG- -5'
29545 5' -60.6 NC_006151.1 + 137864 0.66 0.714994
Target:  5'- cGUGuaCGCGCACGgGCgcagccugCGGCuGCCc -3'
miRNA:   3'- aCGCcgGCGCGUGCaCGaa------GUCG-CGG- -5'
29545 5' -60.6 NC_006151.1 + 83765 0.66 0.714994
Target:  5'- -uCGGCuCGgGCACGUa---CAGCGCCc -3'
miRNA:   3'- acGCCG-GCgCGUGCAcgaaGUCGCGG- -5'
29545 5' -60.6 NC_006151.1 + 26359 0.66 0.714994
Target:  5'- gGCgGGCCGCGUcggggcgcGCGUcccccgGCgggCGGCGUCc -3'
miRNA:   3'- aCG-CCGGCGCG--------UGCA------CGaa-GUCGCGG- -5'
29545 5' -60.6 NC_006151.1 + 21950 0.66 0.714994
Target:  5'- cGCGGaCGgGUccaccacaucgGCGUGgUgCGGCGCCg -3'
miRNA:   3'- aCGCCgGCgCG-----------UGCACgAaGUCGCGG- -5'
29545 5' -60.6 NC_006151.1 + 57667 0.66 0.714022
Target:  5'- cUGUGGuacgccuCCGgGCACGUguGCUUgAGCccGCCg -3'
miRNA:   3'- -ACGCC-------GGCgCGUGCA--CGAAgUCG--CGG- -5'
29545 5' -60.6 NC_006151.1 + 65344 0.66 0.709148
Target:  5'- cGCGGCCgagcucggugaagacGCGCcccaggGCGUGCacCAcGUGCCc -3'
miRNA:   3'- aCGCCGG---------------CGCG------UGCACGaaGU-CGCGG- -5'
29545 5' -60.6 NC_006151.1 + 59904 0.66 0.709148
Target:  5'- cGCGcGUCGCGCagaaagucgcagaagGCGcGCgccgUCAGCGgCg -3'
miRNA:   3'- aCGC-CGGCGCG---------------UGCaCGa---AGUCGCgG- -5'
29545 5' -60.6 NC_006151.1 + 109515 0.66 0.705237
Target:  5'- cGCuGCCGcCGCAgcCGU-CUcagCAGCGCCc -3'
miRNA:   3'- aCGcCGGC-GCGU--GCAcGAa--GUCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.