miRNA display CGI


Results 1 - 20 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 111046 0.65 0.59668
Target:  5'- aCGGGCagGGCGcccucgaGCGUcuGCGCGgugauCGUCCg -3'
miRNA:   3'- gGUCCGagCCGC-------CGCG--CGCGC-----GCAGG- -5'
29546 3' -64.1 NC_006151.1 + 78040 0.65 0.59668
Target:  5'- uCCcGGCgacgCGGCgcaucugGGCGaCGCGCgGCGggagCCu -3'
miRNA:   3'- -GGuCCGa---GCCG-------CCGC-GCGCG-CGCa---GG- -5'
29546 3' -64.1 NC_006151.1 + 52972 0.65 0.595724
Target:  5'- gCAGGCggcucauguacgCGcugaccucGCGGUGCGacgaguacagGCGCGUCCa -3'
miRNA:   3'- gGUCCGa-----------GC--------CGCCGCGCg---------CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 85598 0.65 0.594767
Target:  5'- uCCA-GCUCGGCGcgcucgugcccaacGCGCcgccgcCGCGCGgcgCCa -3'
miRNA:   3'- -GGUcCGAGCCGC--------------CGCGc-----GCGCGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 85247 0.66 0.588081
Target:  5'- gCCAGGCgcuGGCcgagGGCGgGCGCaucuCGUaCCg -3'
miRNA:   3'- -GGUCCGag-CCG----CCGCgCGCGc---GCA-GG- -5'
29546 3' -64.1 NC_006151.1 + 60744 0.66 0.588081
Target:  5'- aCgAGGCagCGGCGGCuCGCGaagGCGgUCg -3'
miRNA:   3'- -GgUCCGa-GCCGCCGcGCGCg--CGC-AGg -5'
29546 3' -64.1 NC_006151.1 + 17908 0.66 0.588081
Target:  5'- aCCA-GCgCGGCGGCGCugauCGCGaCG-CCc -3'
miRNA:   3'- -GGUcCGaGCCGCCGCGc---GCGC-GCaGG- -5'
29546 3' -64.1 NC_006151.1 + 118203 0.66 0.578554
Target:  5'- gCCGGGCacgUGGCcguGGUG-GCGgGCGcCCg -3'
miRNA:   3'- -GGUCCGa--GCCG---CCGCgCGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 102929 0.66 0.578554
Target:  5'- gCCgAGGagCGGCuGCGCGCGCuggacgcgGCGcCCg -3'
miRNA:   3'- -GG-UCCgaGCCGcCGCGCGCG--------CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 25334 0.66 0.578554
Target:  5'- gCCGGGa-CGGcCGGCGUGC-CGCGa-- -3'
miRNA:   3'- -GGUCCgaGCC-GCCGCGCGcGCGCagg -5'
29546 3' -64.1 NC_006151.1 + 97802 0.66 0.578554
Target:  5'- cUCAGGCgc-GCGGC-CGUGCGCcgGUCg -3'
miRNA:   3'- -GGUCCGagcCGCCGcGCGCGCG--CAGg -5'
29546 3' -64.1 NC_006151.1 + 118152 0.66 0.588081
Target:  5'- gCCGcGGC--GGUGGCGCcgcugGUGCGCGgCCu -3'
miRNA:   3'- -GGU-CCGagCCGCCGCG-----CGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 133099 0.66 0.588081
Target:  5'- gCAGGaa--GCGGUcgaGCGC-CGCGUCCg -3'
miRNA:   3'- gGUCCgagcCGCCG---CGCGcGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 5915 0.66 0.588081
Target:  5'- gCCGGGgUCGGCGGC-CgGgGCcCGgagCCg -3'
miRNA:   3'- -GGUCCgAGCCGCCGcG-CgCGcGCa--GG- -5'
29546 3' -64.1 NC_006151.1 + 11347 0.66 0.588081
Target:  5'- gCGGGC-CGcccGCgGGCGCuacCGCGCGcUCCg -3'
miRNA:   3'- gGUCCGaGC---CG-CCGCGc--GCGCGC-AGG- -5'
29546 3' -64.1 NC_006151.1 + 64417 0.66 0.588081
Target:  5'- aCAGGUcgcucUCGcuCuGCGCGCGCGUGgCCg -3'
miRNA:   3'- gGUCCG-----AGCc-GcCGCGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 74505 0.66 0.588081
Target:  5'- cCCAGaugagCGGgGGCaGCaGCGUGgCGUCCg -3'
miRNA:   3'- -GGUCcga--GCCgCCG-CG-CGCGC-GCAGG- -5'
29546 3' -64.1 NC_006151.1 + 88901 0.66 0.588081
Target:  5'- cUCGGGgUCGGCGuCGgGCGagcggaaGCGcCCg -3'
miRNA:   3'- -GGUCCgAGCCGCcGCgCGCg------CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 5096 0.66 0.5919
Target:  5'- gCGGGCgccggcggagacggUGGCGGCccgGCGCGgGCGa-- -3'
miRNA:   3'- gGUCCGa-------------GCCGCCG---CGCGCgCGCagg -5'
29546 3' -64.1 NC_006151.1 + 70196 0.66 0.578554
Target:  5'- gCUuGGuCUCGuuGGCGaUGUGgGCGUCCa -3'
miRNA:   3'- -GGuCC-GAGCcgCCGC-GCGCgCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.