miRNA display CGI


Results 1 - 20 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 19116 0.85 0.036914
Target:  5'- gCAGGCaccgCGGgGGCGCGCGCGCGUaguaCCa -3'
miRNA:   3'- gGUCCGa---GCCgCCGCGCGCGCGCA----GG- -5'
29546 3' -64.1 NC_006151.1 + 91563 0.84 0.038855
Target:  5'- gCgGGGCgauGGCGGCGCGCGCGUGcUCCa -3'
miRNA:   3'- -GgUCCGag-CCGCCGCGCGCGCGC-AGG- -5'
29546 3' -64.1 NC_006151.1 + 88373 0.84 0.04304
Target:  5'- gCAGGCUCGGCGcgaGCGCGUccGCGgCGUCCg -3'
miRNA:   3'- gGUCCGAGCCGC---CGCGCG--CGC-GCAGG- -5'
29546 3' -64.1 NC_006151.1 + 95436 0.84 0.04304
Target:  5'- aCguGGCgagGGCGGCGcCGCGCGUGUCCg -3'
miRNA:   3'- -GguCCGag-CCGCCGC-GCGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 111113 0.83 0.045295
Target:  5'- --uGGCUCGGCGGgGaGCGCGCGUCUg -3'
miRNA:   3'- gguCCGAGCCGCCgCgCGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 64497 0.82 0.054132
Target:  5'- gCGGGCgcgGGCGGCGgGCGCGCG-CCg -3'
miRNA:   3'- gGUCCGag-CCGCCGCgCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 115109 0.8 0.071491
Target:  5'- uCCAGGC-CGGCgccgccGGCGaCGCGCGCGUgCg -3'
miRNA:   3'- -GGUCCGaGCCG------CCGC-GCGCGCGCAgG- -5'
29546 3' -64.1 NC_006151.1 + 117216 0.8 0.073312
Target:  5'- aCGGGCgCGGCGucgaCGaCGCGCGCGUCCa -3'
miRNA:   3'- gGUCCGaGCCGCc---GC-GCGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 89889 0.8 0.075178
Target:  5'- cUCGGGCUCGGCGGUGgG-GUcgGCGUCCg -3'
miRNA:   3'- -GGUCCGAGCCGCCGCgCgCG--CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 57223 0.8 0.078848
Target:  5'- aCgAGGCcgucgcaGGCGGCGCGCGCggccucgGCGUCCg -3'
miRNA:   3'- -GgUCCGag-----CCGCCGCGCGCG-------CGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 66520 0.8 0.081866
Target:  5'- gCCGGGCUCGcGCgcgccgcgcucuucgGGgGCGCGCGCGgCCg -3'
miRNA:   3'- -GGUCCGAGC-CG---------------CCgCGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 31750 0.79 0.087142
Target:  5'- gCCGGGgacgcgcCUgCGGCGGCGgGCGCGCG-CCg -3'
miRNA:   3'- -GGUCC-------GA-GCCGCCGCgCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 102538 0.79 0.087359
Target:  5'- aCCAGaCggUGGUGGCGCGCGCGCGggCCc -3'
miRNA:   3'- -GGUCcGa-GCCGCCGCGCGCGCGCa-GG- -5'
29546 3' -64.1 NC_006151.1 + 68283 0.79 0.089565
Target:  5'- gCCGGGCgccaCGGCGGCcagGCGCGCGcCCa -3'
miRNA:   3'- -GGUCCGa---GCCGCCGcg-CGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 55075 0.79 0.089565
Target:  5'- gCGGGCUCGGCcgcGGCGCGCcucGUGCG-CCu -3'
miRNA:   3'- gGUCCGAGCCG---CCGCGCG---CGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 100890 0.79 0.091822
Target:  5'- -gAGGUgcugCGccGCGGCGCGCGCGCGcCCg -3'
miRNA:   3'- ggUCCGa---GC--CGCCGCGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 58435 0.79 0.093901
Target:  5'- gCCAcGcCUCGGUGGCGUGCGCGCGcgcggcgucgcggUCCa -3'
miRNA:   3'- -GGUcC-GAGCCGCCGCGCGCGCGC-------------AGG- -5'
29546 3' -64.1 NC_006151.1 + 10916 0.79 0.096501
Target:  5'- aCCGGGgUCGGgcccaCGGCgccgaggguggGCGCGCGUGUCCg -3'
miRNA:   3'- -GGUCCgAGCC-----GCCG-----------CGCGCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 72053 0.78 0.098924
Target:  5'- gCAGcGuCUCGGCGGCGCGCGCcaccacccGCG-CCg -3'
miRNA:   3'- gGUC-C-GAGCCGCCGCGCGCG--------CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 133149 0.78 0.106543
Target:  5'- -aGGGaCUCGGCGGCgGCGCGgGCGUgggCCu -3'
miRNA:   3'- ggUCC-GAGCCGCCG-CGCGCgCGCA---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.