miRNA display CGI


Results 21 - 40 of 447 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29546 3' -64.1 NC_006151.1 + 25334 0.66 0.578554
Target:  5'- gCCGGGa-CGGcCGGCGUGC-CGCGa-- -3'
miRNA:   3'- -GGUCCgaGCC-GCCGCGCGcGCGCagg -5'
29546 3' -64.1 NC_006151.1 + 102929 0.66 0.578554
Target:  5'- gCCgAGGagCGGCuGCGCGCGCuggacgcgGCGcCCg -3'
miRNA:   3'- -GG-UCCgaGCCGcCGCGCGCG--------CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 118203 0.66 0.578554
Target:  5'- gCCGGGCacgUGGCcguGGUG-GCGgGCGcCCg -3'
miRNA:   3'- -GGUCCGa--GCCG---CCGCgCGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 130768 0.66 0.577603
Target:  5'- gCCAGGaa-GGUcccgucgGGCaUGuCGCGCGUCCa -3'
miRNA:   3'- -GGUCCgagCCG-------CCGcGC-GCGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 125461 0.66 0.577603
Target:  5'- cCCAGcGCcgUGGCcacGGcCGCGCucggccaGCGCGUCUc -3'
miRNA:   3'- -GGUC-CGa-GCCG---CC-GCGCG-------CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 2344 0.66 0.56906
Target:  5'- gUCGGGCUCcagcagcgccGCGGCGCagaagGCGCGCaacucggCCg -3'
miRNA:   3'- -GGUCCGAGc---------CGCCGCG-----CGCGCGca-----GG- -5'
29546 3' -64.1 NC_006151.1 + 27037 0.66 0.56906
Target:  5'- -gGGGC-CGaGgGGCGCugGCGCGUGUagcCCa -3'
miRNA:   3'- ggUCCGaGC-CgCCGCG--CGCGCGCA---GG- -5'
29546 3' -64.1 NC_006151.1 + 70093 0.66 0.56906
Target:  5'- gCguGGg-CGGCgaagGGCGCGaGCGgGUCCa -3'
miRNA:   3'- -GguCCgaGCCG----CCGCGCgCGCgCAGG- -5'
29546 3' -64.1 NC_006151.1 + 128013 0.66 0.56906
Target:  5'- gCGGGg-CGGCGGCGa-CG-GCGUCUg -3'
miRNA:   3'- gGUCCgaGCCGCCGCgcGCgCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 40430 0.66 0.56906
Target:  5'- cCCucGGCcCGGCGGCGCuugccuccccgGCGCcuGCcUCCc -3'
miRNA:   3'- -GGu-CCGaGCCGCCGCG-----------CGCG--CGcAGG- -5'
29546 3' -64.1 NC_006151.1 + 141694 0.66 0.56906
Target:  5'- cCCAcGGCggcUGGCGGCGgaCGCG-GUGcCCg -3'
miRNA:   3'- -GGU-CCGa--GCCGCCGC--GCGCgCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 69847 0.66 0.568113
Target:  5'- gCGGGC-CGGCaggacucgucguaGGUGaagaccagcuCGCGCGCGcCCa -3'
miRNA:   3'- gGUCCGaGCCG-------------CCGC----------GCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 135022 0.66 0.559605
Target:  5'- -gGGGCagCaGCGGgGC-CGCGuCGUCCu -3'
miRNA:   3'- ggUCCGa-GcCGCCgCGcGCGC-GCAGG- -5'
29546 3' -64.1 NC_006151.1 + 29133 0.66 0.559605
Target:  5'- gCCGGGaagUC-GCGGgaGCGCGCGUGaCCc -3'
miRNA:   3'- -GGUCCg--AGcCGCCg-CGCGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 104389 0.66 0.559605
Target:  5'- --cGGCUggcccgcaucgcCGGCGGCGUGCuggccCGCG-CCg -3'
miRNA:   3'- gguCCGA------------GCCGCCGCGCGc----GCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 129343 0.66 0.559605
Target:  5'- cCCGGGg-CGGcCGGCGCGCcgauaaauGCGCucgggguUCCg -3'
miRNA:   3'- -GGUCCgaGCC-GCCGCGCG--------CGCGc------AGG- -5'
29546 3' -64.1 NC_006151.1 + 129607 0.66 0.559605
Target:  5'- gCGGGCaCGuGCGcaccaGCGgGUcgaGCGCGUCCa -3'
miRNA:   3'- gGUCCGaGC-CGC-----CGCgCG---CGCGCAGG- -5'
29546 3' -64.1 NC_006151.1 + 130725 0.66 0.559605
Target:  5'- -gGGGCcCGcGCGGcCGCgGCGCaGCG-CCa -3'
miRNA:   3'- ggUCCGaGC-CGCC-GCG-CGCG-CGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 135863 0.66 0.559605
Target:  5'- aCCGGGCacgUGGCcaGCGUccGCGUGCGgCCc -3'
miRNA:   3'- -GGUCCGa--GCCGc-CGCG--CGCGCGCaGG- -5'
29546 3' -64.1 NC_006151.1 + 97314 0.66 0.559605
Target:  5'- gUCGGGCa--GCGcGCGCuGCGCGgGUCg -3'
miRNA:   3'- -GGUCCGagcCGC-CGCG-CGCGCgCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.