miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29547 3' -59.2 NC_006151.1 + 73599 0.66 0.740141
Target:  5'- cCGGGGUGcAGCUGG-CGCCg------ -3'
miRNA:   3'- -GCCCCACcUCGACCcGCGGgauauuu -5'
29547 3' -59.2 NC_006151.1 + 41504 0.66 0.740141
Target:  5'- aGGGGagccaaUGGGGC-GGGCGCCg------ -3'
miRNA:   3'- gCCCC------ACCUCGaCCCGCGGgauauuu -5'
29547 3' -59.2 NC_006151.1 + 5496 0.66 0.730375
Target:  5'- uGGGGUuggaggagacGGGGCUccGGGCGCCa------ -3'
miRNA:   3'- gCCCCA----------CCUCGA--CCCGCGGgauauuu -5'
29547 3' -59.2 NC_006151.1 + 98208 0.66 0.720525
Target:  5'- gCGGGGUcGAGUgcgcgGcGGCGCCCg----- -3'
miRNA:   3'- -GCCCCAcCUCGa----C-CCGCGGGauauuu -5'
29547 3' -59.2 NC_006151.1 + 40790 0.66 0.716563
Target:  5'- uGGGGUGGAGguggucuuguggaUGGGgGuCCCUGg--- -3'
miRNA:   3'- gCCCCACCUCg------------ACCCgC-GGGAUauuu -5'
29547 3' -59.2 NC_006151.1 + 64786 0.66 0.700607
Target:  5'- cCGGGGcGcGAGCUGGccaCGCCCUc---- -3'
miRNA:   3'- -GCCCCaC-CUCGACCc--GCGGGAuauuu -5'
29547 3' -59.2 NC_006151.1 + 43792 0.66 0.700607
Target:  5'- aGGGGaGGGGUUGGGUaCCCa----- -3'
miRNA:   3'- gCCCCaCCUCGACCCGcGGGauauuu -5'
29547 3' -59.2 NC_006151.1 + 138474 0.66 0.699604
Target:  5'- gCGGaGGUGGGGCaaUcaugcuccucggcGGGCGCCCg----- -3'
miRNA:   3'- -GCC-CCACCUCG--A-------------CCCGCGGGauauuu -5'
29547 3' -59.2 NC_006151.1 + 31729 0.67 0.690557
Target:  5'- gGGGcGUGGAGa--GGCGCCCg----- -3'
miRNA:   3'- gCCC-CACCUCgacCCGCGGGauauuu -5'
29547 3' -59.2 NC_006151.1 + 27247 0.67 0.690557
Target:  5'- uCGGGGUcGGGC-GGGgGCCCg----- -3'
miRNA:   3'- -GCCCCAcCUCGaCCCgCGGGauauuu -5'
29547 3' -59.2 NC_006151.1 + 33951 0.67 0.690557
Target:  5'- cCGGGGgcucGGGGCgggacGcGGCGCCCg----- -3'
miRNA:   3'- -GCCCCa---CCUCGa----C-CCGCGGGauauuu -5'
29547 3' -59.2 NC_006151.1 + 52381 0.67 0.670322
Target:  5'- cCGGGGcccgcgGGGGCggcGGGCGCCg------ -3'
miRNA:   3'- -GCCCCa-----CCUCGa--CCCGCGGgauauuu -5'
29547 3' -59.2 NC_006151.1 + 30701 0.68 0.619338
Target:  5'- gGGGGUgucGGGGCcGGGUucGCUCUGUAc- -3'
miRNA:   3'- gCCCCA---CCUCGaCCCG--CGGGAUAUuu -5'
29547 3' -59.2 NC_006151.1 + 3249 0.68 0.619338
Target:  5'- gCGGcGGcGGAGCgGGGCGCCg------ -3'
miRNA:   3'- -GCC-CCaCCUCGaCCCGCGGgauauuu -5'
29547 3' -59.2 NC_006151.1 + 65043 0.68 0.598957
Target:  5'- aGGGGgcccGGcGGCggcGGGCGCCCguuaAUAAAg -3'
miRNA:   3'- gCCCCa---CC-UCGa--CCCGCGGGa---UAUUU- -5'
29547 3' -59.2 NC_006151.1 + 106457 0.68 0.598957
Target:  5'- uCGGaGacGGAGCugUGGGCGCCCUGg--- -3'
miRNA:   3'- -GCC-CcaCCUCG--ACCCGCGGGAUauuu -5'
29547 3' -59.2 NC_006151.1 + 3856 0.68 0.588799
Target:  5'- cCGGGGaggccGGAGg-GGGCGCCCg----- -3'
miRNA:   3'- -GCCCCa----CCUCgaCCCGCGGGauauuu -5'
29547 3' -59.2 NC_006151.1 + 136992 0.68 0.575642
Target:  5'- gGGcGGcGGGcgcgcgcgcacggcGCUGGGCGCCCUGc--- -3'
miRNA:   3'- gCC-CCaCCU--------------CGACCCGCGGGAUauuu -5'
29547 3' -59.2 NC_006151.1 + 20126 0.69 0.568584
Target:  5'- aCGGGGcuggGGGGC-GGGCGCCg------ -3'
miRNA:   3'- -GCCCCa---CCUCGaCCCGCGGgauauuu -5'
29547 3' -59.2 NC_006151.1 + 99501 0.69 0.548547
Target:  5'- aGGGcGUGGAGCacgUGGuGCGCCaCUGc--- -3'
miRNA:   3'- gCCC-CACCUCG---ACC-CGCGG-GAUauuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.