Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29548 | 3' | -62.9 | NC_006151.1 | + | 90280 | 0.66 | 0.553487 |
Target: 5'- gCGCCgacgaGCUGGaGGCCcaugcacGCGGGGAuGAaccgGUCc -3' miRNA: 3'- -GCGG-----UGACC-CCGG-------CGCCCCU-CUa---CAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 5429 | 0.67 | 0.497763 |
Target: 5'- uCGUCcuuCUcGGGGCCGCGGGcGAcg-GUCu -3' miRNA: 3'- -GCGGu--GA-CCCCGGCGCCC-CUcuaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 18042 | 0.67 | 0.497763 |
Target: 5'- uCGUC-CUGGGGgCgcaGCGGGGAGcgggGUCc -3' miRNA: 3'- -GCGGuGACCCCgG---CGCCCCUCua--CAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 21574 | 0.67 | 0.507043 |
Target: 5'- cCGCCGa--GGGCCGCGcGGGGucGAUGg- -3' miRNA: 3'- -GCGGUgacCCCGGCGC-CCCU--CUACag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 97361 | 0.67 | 0.516396 |
Target: 5'- gGCCGCggcggcGGcGGgCGCGGcGGGGgcGUCg -3' miRNA: 3'- gCGGUGa-----CC-CCgGCGCC-CCUCuaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 84820 | 0.67 | 0.525818 |
Target: 5'- gGCCGCggacGGGGCCGCGaGGuGcAGAUcGcCa -3' miRNA: 3'- gCGGUGa---CCCCGGCGC-CC-C-UCUA-CaG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 89553 | 0.67 | 0.525818 |
Target: 5'- gGCCGgUGGaGGCCGCGaGGcuGAUGg- -3' miRNA: 3'- gCGGUgACC-CCGGCGC-CCcuCUACag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 5038 | 0.67 | 0.525818 |
Target: 5'- gGCCGg-GGaGGCCGCGGcGGAGGa--- -3' miRNA: 3'- gCGGUgaCC-CCGGCGCC-CCUCUacag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 713 | 0.67 | 0.535304 |
Target: 5'- cCGUCGCaccgGGGGuCCGCGGGcGGGGg--- -3' miRNA: 3'- -GCGGUGa---CCCC-GGCGCCC-CUCUacag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 129528 | 0.67 | 0.535304 |
Target: 5'- cCGCCgACgggGGGGCC-CGGGGccGccGUCa -3' miRNA: 3'- -GCGG-UGa--CCCCGGcGCCCCu-CuaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 113675 | 0.67 | 0.536256 |
Target: 5'- uCGCCGCcgagaaccgcuucgaGGGGCgcgugUGCGGGGAGcUGUg -3' miRNA: 3'- -GCGGUGa--------------CCCCG-----GCGCCCCUCuACAg -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 28372 | 0.67 | 0.544849 |
Target: 5'- uCGCCAaugGGGGCaCGUGGGGcccGUGg- -3' miRNA: 3'- -GCGGUga-CCCCG-GCGCCCCuc-UACag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 29602 | 0.66 | 0.603075 |
Target: 5'- gGCCGCggcggcgGGGGCUGgUGuGGGAGGaGUg -3' miRNA: 3'- gCGGUGa------CCCCGGC-GC-CCCUCUaCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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