Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29548 | 3' | -62.9 | NC_006151.1 | + | 5038 | 0.67 | 0.525818 |
Target: 5'- gGCCGg-GGaGGCCGCGGcGGAGGa--- -3' miRNA: 3'- gCGGUgaCC-CCGGCGCC-CCUCUacag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 97361 | 0.67 | 0.516396 |
Target: 5'- gGCCGCggcggcGGcGGgCGCGGcGGGGgcGUCg -3' miRNA: 3'- gCGGUGa-----CC-CCgGCGCC-CCUCuaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 21574 | 0.67 | 0.507043 |
Target: 5'- cCGCCGa--GGGCCGCGcGGGGucGAUGg- -3' miRNA: 3'- -GCGGUgacCCCGGCGC-CCCU--CUACag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 18042 | 0.67 | 0.497763 |
Target: 5'- uCGUC-CUGGGGgCgcaGCGGGGAGcgggGUCc -3' miRNA: 3'- -GCGGuGACCCCgG---CGCCCCUCua--CAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 5429 | 0.67 | 0.497763 |
Target: 5'- uCGUCcuuCUcGGGGCCGCGGGcGAcg-GUCu -3' miRNA: 3'- -GCGGu--GA-CCCCGGCGCCC-CUcuaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 40565 | 0.68 | 0.488559 |
Target: 5'- aGCgGCggcGGcGGCCGCGGcGGAGGgcUCg -3' miRNA: 3'- gCGgUGa--CC-CCGGCGCC-CCUCUacAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 52385 | 0.68 | 0.478529 |
Target: 5'- gGcCCGCgGGGGCgGCGGGcgccgccgcgcccGAGAaGUCa -3' miRNA: 3'- gC-GGUGaCCCCGgCGCCC-------------CUCUaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 121390 | 0.68 | 0.478529 |
Target: 5'- cCGCCuucgacuUUGGGGCCuGCGGcgcgggcGGGGAcGUCg -3' miRNA: 3'- -GCGGu------GACCCCGG-CGCC-------CCUCUaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 5313 | 0.68 | 0.474003 |
Target: 5'- uGCUGCUGGagcugcugaagccgcGGCCGCGGcGGAGGg--- -3' miRNA: 3'- gCGGUGACC---------------CCGGCGCC-CCUCUacag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 21429 | 0.68 | 0.470398 |
Target: 5'- gGCCucgGGGGUCGCGGcGuGGGGUGg- -3' miRNA: 3'- gCGGugaCCCCGGCGCC-C-CUCUACag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 40519 | 0.68 | 0.469499 |
Target: 5'- gGCCGgaGGuGGCUGCGGcggcggcGGAGGUGg- -3' miRNA: 3'- gCGGUgaCC-CCGGCGCC-------CCUCUACag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 71633 | 0.68 | 0.461447 |
Target: 5'- uCGCCGggGGGGaCgGuCGGGGGGccGUCg -3' miRNA: 3'- -GCGGUgaCCCC-GgC-GCCCCUCuaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 111736 | 0.68 | 0.461447 |
Target: 5'- aCGCgCACguaGGGGUCGCaGGGGAcGUGg- -3' miRNA: 3'- -GCG-GUGa--CCCCGGCG-CCCCUcUACag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 103806 | 0.68 | 0.461447 |
Target: 5'- gGCCGCgcugucGGcGGCCGUGGcggcggccguGGAGAUGcUCg -3' miRNA: 3'- gCGGUGa-----CC-CCGGCGCC----------CCUCUAC-AG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 8486 | 0.68 | 0.452586 |
Target: 5'- gGUCGgacGGGGCgGgCGGGGAgGGUGUCg -3' miRNA: 3'- gCGGUga-CCCCGgC-GCCCCU-CUACAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 112033 | 0.68 | 0.435149 |
Target: 5'- gGCgggaGCUGGGGCCgGCGGGcGGGcgG-Cg -3' miRNA: 3'- gCGg---UGACCCCGG-CGCCC-CUCuaCaG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 2102 | 0.68 | 0.435149 |
Target: 5'- gGCC-CgagcGGGCCGCGGGGccGGccGUCg -3' miRNA: 3'- gCGGuGac--CCCGGCGCCCC--UCuaCAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 30807 | 0.69 | 0.426577 |
Target: 5'- gGCCcCgGGGGCaCGCGGGcGGGAggaGUUg -3' miRNA: 3'- gCGGuGaCCCCG-GCGCCC-CUCUa--CAG- -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 32779 | 0.69 | 0.418107 |
Target: 5'- aCGCCGC---GGCCGCGGGGGGccGa- -3' miRNA: 3'- -GCGGUGaccCCGGCGCCCCUCuaCag -5' |
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29548 | 3' | -62.9 | NC_006151.1 | + | 76678 | 0.69 | 0.401477 |
Target: 5'- gGUCGCUGGGGagcaGgGGGGAGA-GUg -3' miRNA: 3'- gCGGUGACCCCgg--CgCCCCUCUaCAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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