miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29548 5' -56.5 NC_006151.1 + 2334 0.66 0.87033
Target:  5'- cGGcCUCgGCgucgGGCUCcaGCAgcgCCGCGGCg -3'
miRNA:   3'- aCUaGAGgUG----CCGAG--CGUa--GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 12671 0.66 0.87033
Target:  5'- -----gCCGCGGC-CGCAgCCGCcGCg -3'
miRNA:   3'- acuagaGGUGCCGaGCGUaGGCGuCG- -5'
29548 5' -56.5 NC_006151.1 + 78217 0.66 0.87033
Target:  5'- cGggCUCCACGucGCUCaCGggCgCGCAGCg -3'
miRNA:   3'- aCuaGAGGUGC--CGAGcGUa-G-GCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 88401 0.66 0.87033
Target:  5'- ----gUCCGCGGC-CGCGaggcccgggacgUCCGCGcGCg -3'
miRNA:   3'- acuagAGGUGCCGaGCGU------------AGGCGU-CG- -5'
29548 5' -56.5 NC_006151.1 + 95792 0.66 0.87033
Target:  5'- aUGuUCagCACGGCgCGaCGUCCGCGuGCc -3'
miRNA:   3'- -ACuAGagGUGCCGaGC-GUAGGCGU-CG- -5'
29548 5' -56.5 NC_006151.1 + 134498 0.66 0.87033
Target:  5'- -cGUCUUCGgGcGCUCGUcccucaaccUCCGCGGCa -3'
miRNA:   3'- acUAGAGGUgC-CGAGCGu--------AGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 127359 0.66 0.86736
Target:  5'- cGGUCUcgcCCugGGCggggacCGCGgggguggcgggggCCGCGGCc -3'
miRNA:   3'- aCUAGA---GGugCCGa-----GCGUa------------GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 21999 0.66 0.86284
Target:  5'- aGAUCUgCCugGGgUCGCAgUCgGCGu- -3'
miRNA:   3'- aCUAGA-GGugCCgAGCGU-AGgCGUcg -5'
29548 5' -56.5 NC_006151.1 + 37462 0.66 0.86284
Target:  5'- -----gCCGCGGCcCGCuaccgcgCCGCGGCc -3'
miRNA:   3'- acuagaGGUGCCGaGCGua-----GGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 69624 0.66 0.86208
Target:  5'- gGAUCU-CGCGGUcgGCGUCCcgcgcguGCGGCg -3'
miRNA:   3'- aCUAGAgGUGCCGagCGUAGG-------CGUCG- -5'
29548 5' -56.5 NC_006151.1 + 37652 0.66 0.858246
Target:  5'- gGGUCcacgcgccccacggCCACGGCUCcuuCAUCaccgGCAGCg -3'
miRNA:   3'- aCUAGa-------------GGUGCCGAGc--GUAGg---CGUCG- -5'
29548 5' -56.5 NC_006151.1 + 53532 0.66 0.855141
Target:  5'- gUGAgccgCUCCAgGGCgCGCAggCGC-GCa -3'
miRNA:   3'- -ACUa---GAGGUgCCGaGCGUagGCGuCG- -5'
29548 5' -56.5 NC_006151.1 + 38088 0.66 0.855141
Target:  5'- gUGAcggCCGCGcuGCUCGCGcUCCGCGacGCg -3'
miRNA:   3'- -ACUagaGGUGC--CGAGCGU-AGGCGU--CG- -5'
29548 5' -56.5 NC_006151.1 + 84359 0.66 0.855141
Target:  5'- cGG-C-CCGCGGCggugaUCGCGaUCGCGGCg -3'
miRNA:   3'- aCUaGaGGUGCCG-----AGCGUaGGCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 106733 0.66 0.855141
Target:  5'- aUGAcguUCaccgUCACgGGCUCGCcgCCgaGCAGCg -3'
miRNA:   3'- -ACU---AGa---GGUG-CCGAGCGuaGG--CGUCG- -5'
29548 5' -56.5 NC_006151.1 + 95586 0.67 0.84724
Target:  5'- gGcgCUCCAgGcGCUCGUAcUCGCGcGCa -3'
miRNA:   3'- aCuaGAGGUgC-CGAGCGUaGGCGU-CG- -5'
29548 5' -56.5 NC_006151.1 + 82992 0.67 0.84724
Target:  5'- cUGcgCcgCCACGGCcgcggCGCAgacgCGCGGCg -3'
miRNA:   3'- -ACuaGa-GGUGCCGa----GCGUag--GCGUCG- -5'
29548 5' -56.5 NC_006151.1 + 43602 0.67 0.84724
Target:  5'- cGAUcCUCUGCGGCcCGU-UCCGUcGCa -3'
miRNA:   3'- aCUA-GAGGUGCCGaGCGuAGGCGuCG- -5'
29548 5' -56.5 NC_006151.1 + 36941 0.67 0.84724
Target:  5'- -----gCCGCGGCUUcaGCAgcUCCaGCAGCa -3'
miRNA:   3'- acuagaGGUGCCGAG--CGU--AGG-CGUCG- -5'
29548 5' -56.5 NC_006151.1 + 11229 0.67 0.84724
Target:  5'- --uUCUCC-CgGGC-CGCGagggCCGCGGCg -3'
miRNA:   3'- acuAGAGGuG-CCGaGCGUa---GGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.