miRNA display CGI


Results 1 - 20 of 697 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 3' -64.1 NC_006151.1 + 142247 0.66 0.566211
Target:  5'- cGAGgcgucggucauCGCGGCGAgGaGCGCcccguccCGGCgGCCa -3'
miRNA:   3'- uCUC-----------GCGCCGCUgC-CGCGu------GCCG-CGG- -5'
29549 3' -64.1 NC_006151.1 + 2535 0.66 0.566211
Target:  5'- cGAGCGCGGa----GCGCugGcGgGCCa -3'
miRNA:   3'- uCUCGCGCCgcugcCGCGugC-CgCGG- -5'
29549 3' -64.1 NC_006151.1 + 5917 0.66 0.566211
Target:  5'- cGGGGU-CGGCGGcCGGgGCcCGGaGCCg -3'
miRNA:   3'- -UCUCGcGCCGCU-GCCgCGuGCCgCGG- -5'
29549 3' -64.1 NC_006151.1 + 89433 0.66 0.566211
Target:  5'- -uGGCGCacauGGCGACGGU-CACGuaCGCCu -3'
miRNA:   3'- ucUCGCG----CCGCUGCCGcGUGCc-GCGG- -5'
29549 3' -64.1 NC_006151.1 + 114107 0.66 0.566211
Target:  5'- uGGGCcuCGGCGGCuGCugcccCACGuGCGCCg -3'
miRNA:   3'- uCUCGc-GCCGCUGcCGc----GUGC-CGCGG- -5'
29549 3' -64.1 NC_006151.1 + 27371 0.66 0.566211
Target:  5'- cGGGCG-GGuCGACgGGCGagaACGGCGg- -3'
miRNA:   3'- uCUCGCgCC-GCUG-CCGCg--UGCCGCgg -5'
29549 3' -64.1 NC_006151.1 + 43248 0.66 0.566211
Target:  5'- gGGAGUGCGuGCG--GGUGUggGGUGCUc -3'
miRNA:   3'- -UCUCGCGC-CGCugCCGCGugCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 57108 0.66 0.566211
Target:  5'- cGAGCaGCGcGCGcCGccGCGCccgGCGGuCGCCc -3'
miRNA:   3'- uCUCG-CGC-CGCuGC--CGCG---UGCC-GCGG- -5'
29549 3' -64.1 NC_006151.1 + 85723 0.66 0.566211
Target:  5'- --cGCGCGGaCGA--GCGCACGGaGCUc -3'
miRNA:   3'- ucuCGCGCC-GCUgcCGCGUGCCgCGG- -5'
29549 3' -64.1 NC_006151.1 + 102810 0.66 0.566211
Target:  5'- --uGCGCGGCG-C-GCaGUACaGCGCCa -3'
miRNA:   3'- ucuCGCGCCGCuGcCG-CGUGcCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 116451 0.66 0.566211
Target:  5'- ----gGCGGCGACGGCGUACauguccagGGagacgagGCCg -3'
miRNA:   3'- ucucgCGCCGCUGCCGCGUG--------CCg------CGG- -5'
29549 3' -64.1 NC_006151.1 + 135358 0.66 0.566211
Target:  5'- cGAGcCGcCGcGCGuuGGC-CGCGuGCGCCg -3'
miRNA:   3'- uCUC-GC-GC-CGCugCCGcGUGC-CGCGG- -5'
29549 3' -64.1 NC_006151.1 + 18049 0.66 0.565257
Target:  5'- gGGGGCGCaGCGGgGaGCGgggucccUugGGgGCCa -3'
miRNA:   3'- -UCUCGCGcCGCUgC-CGC-------GugCCgCGG- -5'
29549 3' -64.1 NC_006151.1 + 86784 0.66 0.564304
Target:  5'- uGGGCGgGGCuucugccuaaaaGCGGgGCcucccCGGCGCCc -3'
miRNA:   3'- uCUCGCgCCGc-----------UGCCgCGu----GCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 93567 0.66 0.560495
Target:  5'- --cGcCGCGGgGGCGG-GCGCGccaaagagcgggcucGCGCCg -3'
miRNA:   3'- ucuC-GCGCCgCUGCCgCGUGC---------------CGCGG- -5'
29549 3' -64.1 NC_006151.1 + 61246 0.66 0.556693
Target:  5'- cGGAGCGCGcgccacgaggacGCGGCGGCagGCGGUaUCg -3'
miRNA:   3'- -UCUCGCGC------------CGCUGCCGcgUGCCGcGG- -5'
29549 3' -64.1 NC_006151.1 + 139688 0.66 0.556693
Target:  5'- -cGGCaGCGGCGGCGGCaGCAaCaGCaGCa -3'
miRNA:   3'- ucUCG-CGCCGCUGCCG-CGU-GcCG-CGg -5'
29549 3' -64.1 NC_006151.1 + 128192 0.66 0.556693
Target:  5'- cGAGCGUgccgcgcuccauGGCGccccaGGCGUGCgacgagcucgugGGCGCCa -3'
miRNA:   3'- uCUCGCG------------CCGCug---CCGCGUG------------CCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 88811 0.66 0.556693
Target:  5'- cGAGCGCguccggugGGCGAgggaGGCGUugGCGGaGCUg -3'
miRNA:   3'- uCUCGCG--------CCGCUg---CCGCG--UGCCgCGG- -5'
29549 3' -64.1 NC_006151.1 + 83590 0.66 0.556693
Target:  5'- aAGAGCGggaccaGGCG-CGuGUGCagcagcagguACGGCGUCg -3'
miRNA:   3'- -UCUCGCg-----CCGCuGC-CGCG----------UGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.