miRNA display CGI


Results 1 - 20 of 697 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 3' -64.1 NC_006151.1 + 136998 0.91 0.011363
Target:  5'- cGGGCGCGcGCGcACGGCGCugGGCGCCc -3'
miRNA:   3'- uCUCGCGC-CGC-UGCCGCGugCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 137123 0.88 0.018189
Target:  5'- gGGGGCGC-GCGACGGCGCggcgcgacGCGGCGCCg -3'
miRNA:   3'- -UCUCGCGcCGCUGCCGCG--------UGCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 68257 0.88 0.020189
Target:  5'- uAGAcgcGCGCGGCGACGGU-CGCGGCGCCg -3'
miRNA:   3'- -UCU---CGCGCCGCUGCCGcGUGCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 84412 0.87 0.023603
Target:  5'- uGGGCGCGGUgauaaGGCGGCGCGCGGCGgCg -3'
miRNA:   3'- uCUCGCGCCG-----CUGCCGCGUGCCGCgG- -5'
29549 3' -64.1 NC_006151.1 + 3245 0.87 0.024225
Target:  5'- -cGGCGCGGCGGCGGaGCGgGGCGCCg -3'
miRNA:   3'- ucUCGCGCCGCUGCCgCGUgCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 96390 0.86 0.025518
Target:  5'- --cGCGCGGUGcCGGCGCACGGCgGCCg -3'
miRNA:   3'- ucuCGCGCCGCuGCCGCGUGCCG-CGG- -5'
29549 3' -64.1 NC_006151.1 + 30335 0.84 0.03668
Target:  5'- aGGAG-GCGGCGGCGGCGCGagGGCGCg -3'
miRNA:   3'- -UCUCgCGCCGCUGCCGCGUg-CCGCGg -5'
29549 3' -64.1 NC_006151.1 + 113643 0.84 0.03668
Target:  5'- uGAGCGCGGCGACGcgcuGCGCAaGGCGCa -3'
miRNA:   3'- uCUCGCGCCGCUGC----CGCGUgCCGCGg -5'
29549 3' -64.1 NC_006151.1 + 27084 0.84 0.03668
Target:  5'- gAGGGCGCGGCGcAgGGCGCGCGuGuCGCCc -3'
miRNA:   3'- -UCUCGCGCCGC-UgCCGCGUGC-C-GCGG- -5'
29549 3' -64.1 NC_006151.1 + 2287 0.83 0.04067
Target:  5'- cGGGGCGCccGCGGCGGCG-ACGGCGCCc -3'
miRNA:   3'- -UCUCGCGc-CGCUGCCGCgUGCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 64498 0.83 0.041732
Target:  5'- cGGGCGCgGGCGGCgGGCGCGCGcCGCCa -3'
miRNA:   3'- uCUCGCG-CCGCUG-CCGCGUGCcGCGG- -5'
29549 3' -64.1 NC_006151.1 + 128014 0.82 0.047463
Target:  5'- cGGGGCgGCGGCGACGGCGUcuGCGaCGCCc -3'
miRNA:   3'- -UCUCG-CGCCGCUGCCGCG--UGCcGCGG- -5'
29549 3' -64.1 NC_006151.1 + 99558 0.82 0.049581
Target:  5'- uGGGCGCGGCGcgcGCGGCGCugcugcgcgaggugGCGGCgGCCg -3'
miRNA:   3'- uCUCGCGCCGC---UGCCGCG--------------UGCCG-CGG- -5'
29549 3' -64.1 NC_006151.1 + 122922 0.82 0.051262
Target:  5'- cGAGgGCGGCGACGaCGCggacgccgacgGCGGCGCCg -3'
miRNA:   3'- uCUCgCGCCGCUGCcGCG-----------UGCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 58389 0.82 0.053958
Target:  5'- gAGAGCGCGGCGcagcCGGC-CAUGGCGCg -3'
miRNA:   3'- -UCUCGCGCCGCu---GCCGcGUGCCGCGg -5'
29549 3' -64.1 NC_006151.1 + 58999 0.81 0.056791
Target:  5'- gAGAGCGCGGCGuccaGCGGCGCGuCGaaGCCg -3'
miRNA:   3'- -UCUCGCGCCGC----UGCCGCGU-GCcgCGG- -5'
29549 3' -64.1 NC_006151.1 + 11693 0.81 0.058261
Target:  5'- cGGGGcCGCGG-GACGGCGCguGCGGCGCg -3'
miRNA:   3'- -UCUC-GCGCCgCUGCCGCG--UGCCGCGg -5'
29549 3' -64.1 NC_006151.1 + 106672 0.81 0.059768
Target:  5'- cGAGgcCGCGGCGcuCGGCGCGCcgGGCGCCg -3'
miRNA:   3'- uCUC--GCGCCGCu-GCCGCGUG--CCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 90724 0.81 0.059768
Target:  5'- -aGGCgGCGGCGACGGUgGCgGCGGCGCCc -3'
miRNA:   3'- ucUCG-CGCCGCUGCCG-CG-UGCCGCGG- -5'
29549 3' -64.1 NC_006151.1 + 131110 0.81 0.061312
Target:  5'- gGGGGCcCGGCcGCGGCGCgggaggccGCGGCGCCg -3'
miRNA:   3'- -UCUCGcGCCGcUGCCGCG--------UGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.