miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 5' -55.8 NC_006151.1 + 18691 0.66 0.912645
Target:  5'- aCGGGCGCgCGggCggCGCCGGc--GUCg -3'
miRNA:   3'- -GCCCGCG-GCaaGagGUGGUCuuuCAG- -5'
29549 5' -55.8 NC_006151.1 + 127842 0.66 0.912645
Target:  5'- gGcGGCGUCGcggCUgCGCCGGAGGGg- -3'
miRNA:   3'- gC-CCGCGGCaa-GAgGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 105190 0.66 0.912645
Target:  5'- uCGaGGCGCUGcagacgCUgCGCCAGGAGG-Cg -3'
miRNA:   3'- -GC-CCGCGGCaa----GAgGUGGUCUUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 69467 0.66 0.912645
Target:  5'- gCGGGCGCCGgcaccgUCgccgCCGCCuc-GAG-Cg -3'
miRNA:   3'- -GCCCGCGGCa-----AGa---GGUGGucuUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 8299 0.66 0.912645
Target:  5'- gCGGGCGCCGcgUC-CCGCCcc-GAGcCc -3'
miRNA:   3'- -GCCCGCGGCa-AGaGGUGGucuUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 3027 0.66 0.912049
Target:  5'- gGGGCGCCcgguccaGUUC-CCGgcCCAGGcgugcGAGUCc -3'
miRNA:   3'- gCCCGCGG-------CAAGaGGU--GGUCU-----UUCAG- -5'
29549 5' -55.8 NC_006151.1 + 4864 0.66 0.910848
Target:  5'- -cGGCGCCGccgUagcggacgcggccgUCgGCCGGAGGGUCg -3'
miRNA:   3'- gcCCGCGGCaa-G--------------AGgUGGUCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 23904 0.66 0.90903
Target:  5'- uGGGCGUCGgUCgcgggcccgacgggCCGCCGGuc-GUCg -3'
miRNA:   3'- gCCCGCGGCaAGa-------------GGUGGUCuuuCAG- -5'
29549 5' -55.8 NC_006151.1 + 22082 0.66 0.906573
Target:  5'- uGGGCGCgGUaCgugggCCGCCGGugGGcCa -3'
miRNA:   3'- gCCCGCGgCAaGa----GGUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 55904 0.66 0.906573
Target:  5'- cCGGGCGaCCGagcggCUCCGCgAuGGAGGcCg -3'
miRNA:   3'- -GCCCGC-GGCaa---GAGGUGgU-CUUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 97875 0.66 0.906573
Target:  5'- -cGGCgGCCG----CCACCAGGAAGUUg -3'
miRNA:   3'- gcCCG-CGGCaagaGGUGGUCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 137875 0.66 0.905953
Target:  5'- aCGGGCgcagccugcggcuGCCcUUCUUCGCCA--AGGUCg -3'
miRNA:   3'- -GCCCG-------------CGGcAAGAGGUGGUcuUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 98655 0.66 0.900263
Target:  5'- gCGGGCG-CGcgCUCCGCCGacGAcGUCc -3'
miRNA:   3'- -GCCCGCgGCaaGAGGUGGUcuUU-CAG- -5'
29549 5' -55.8 NC_006151.1 + 50352 0.66 0.900263
Target:  5'- gCGGccuccCGCCGcgUCUCCGCCGGcgGGg- -3'
miRNA:   3'- -GCCc----GCGGCa-AGAGGUGGUCuuUCag -5'
29549 5' -55.8 NC_006151.1 + 56992 0.66 0.89372
Target:  5'- aGGGCGgCGaagaugggCUCCauguggGCCAGAcAGUCu -3'
miRNA:   3'- gCCCGCgGCaa------GAGG------UGGUCUuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 37154 0.66 0.89372
Target:  5'- cCGGGcCGCCaccgUCUCCGCCGGc----- -3'
miRNA:   3'- -GCCC-GCGGca--AGAGGUGGUCuuucag -5'
29549 5' -55.8 NC_006151.1 + 42487 0.66 0.889001
Target:  5'- cCGGGCGCCGUUUagCGCCucucuccucucucGUCa -3'
miRNA:   3'- -GCCCGCGGCAAGagGUGGucuuu--------CAG- -5'
29549 5' -55.8 NC_006151.1 + 10944 0.66 0.886944
Target:  5'- uGGGCGCgCGUg-UCCGUguGAGAGUUu -3'
miRNA:   3'- gCCCGCG-GCAagAGGUGguCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 129779 0.66 0.886944
Target:  5'- aGGGCGUCGcUC-CCGCCGGcguGGg- -3'
miRNA:   3'- gCCCGCGGCaAGaGGUGGUCuu-UCag -5'
29549 5' -55.8 NC_006151.1 + 20139 0.66 0.885562
Target:  5'- gCGGGCGCCGcgggggcggcgCguggaCCGCCGGGccgcgcccGGGUCg -3'
miRNA:   3'- -GCCCGCGGCaa---------Ga----GGUGGUCU--------UUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.