Results 41 - 56 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29549 | 5' | -55.8 | NC_006151.1 | + | 68478 | 0.69 | 0.751856 |
Target: 5'- gCGGcGgGCCa--CUCCAgCCGGAGGGUCg -3' miRNA: 3'- -GCC-CgCGGcaaGAGGU-GGUCUUUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 32351 | 0.69 | 0.761469 |
Target: 5'- cCGaGGCGCCGgggCUuucuucccggaCCGCCGGGGAGg- -3' miRNA: 3'- -GC-CCGCGGCaa-GA-----------GGUGGUCUUUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 5624 | 0.69 | 0.770967 |
Target: 5'- gGGGCGCCGccg-CCGCCGGGcgccGAGa- -3' miRNA: 3'- gCCCGCGGCaagaGGUGGUCU----UUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 23625 | 0.69 | 0.770967 |
Target: 5'- aGGGCGUa---CUCCAUCAGGGuGUCg -3' miRNA: 3'- gCCCGCGgcaaGAGGUGGUCUUuCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 112115 | 0.69 | 0.770967 |
Target: 5'- aGGGCGCCcagCUCCACCcc---GUCa -3' miRNA: 3'- gCCCGCGGcaaGAGGUGGucuuuCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 49916 | 0.69 | 0.770967 |
Target: 5'- uCGGGCGCCGgcggCugacggacacgaUCCGCCGGGAccuGGcCg -3' miRNA: 3'- -GCCCGCGGCaa--G------------AGGUGGUCUU---UCaG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 5010 | 0.69 | 0.780339 |
Target: 5'- gCGGGgGCCGggcgggCUCCggggccgggGCCGGGGAGg- -3' miRNA: 3'- -GCCCgCGGCaa----GAGG---------UGGUCUUUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 74016 | 0.69 | 0.780339 |
Target: 5'- gGGGCGUCGUgcgCUCgGCCAuGuucGUCa -3' miRNA: 3'- gCCCGCGGCAa--GAGgUGGU-CuuuCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 100289 | 0.69 | 0.780339 |
Target: 5'- gCGGGCGCaCGgcCUCCGucuucgcgcCCGGGGAGg- -3' miRNA: 3'- -GCCCGCG-GCaaGAGGU---------GGUCUUUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 34013 | 0.7 | 0.69227 |
Target: 5'- cCGGcGCGCCGgcccggcccUCcCCGCCGGGAAGg- -3' miRNA: 3'- -GCC-CGCGGCa--------AGaGGUGGUCUUUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 6503 | 0.71 | 0.649353 |
Target: 5'- uCGGGCGuCCG-UCgagggcugauagCCGCCGGAGAGcCg -3' miRNA: 3'- -GCCCGC-GGCaAGa-----------GGUGGUCUUUCaG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 103548 | 0.73 | 0.559319 |
Target: 5'- uGGGCGCCGggCagCCGCuCGGGGcgcuGGUCa -3' miRNA: 3'- gCCCGCGGCaaGa-GGUG-GUCUU----UCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 36647 | 0.73 | 0.559319 |
Target: 5'- gGcGGCGCCcc-CUCCGCCGGAGGGg- -3' miRNA: 3'- gC-CCGCGGcaaGAGGUGGUCUUUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 76093 | 0.74 | 0.461839 |
Target: 5'- gGGGCGgCGccUUCUCCAUCAGGAcgcgcagcaucuGGUCg -3' miRNA: 3'- gCCCGCgGC--AAGAGGUGGUCUU------------UCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 81721 | 0.75 | 0.443399 |
Target: 5'- gGGGCGCCGggUCcUCGCC-GAAGGUCc -3' miRNA: 3'- gCCCGCGGCa-AGaGGUGGuCUUUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 135177 | 0.76 | 0.382314 |
Target: 5'- aCGGGCGCCGgcugCcgCCGCCGGGccAGUCc -3' miRNA: 3'- -GCCCGCGGCaa--Ga-GGUGGUCUu-UCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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