miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 5' -55.8 NC_006151.1 + 135177 0.76 0.382314
Target:  5'- aCGGGCGCCGgcugCcgCCGCCGGGccAGUCc -3'
miRNA:   3'- -GCCCGCGGCaa--Ga-GGUGGUCUu-UCAG- -5'
29549 5' -55.8 NC_006151.1 + 81721 0.75 0.443399
Target:  5'- gGGGCGCCGggUCcUCGCC-GAAGGUCc -3'
miRNA:   3'- gCCCGCGGCa-AGaGGUGGuCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 76093 0.74 0.461839
Target:  5'- gGGGCGgCGccUUCUCCAUCAGGAcgcgcagcaucuGGUCg -3'
miRNA:   3'- gCCCGCgGC--AAGAGGUGGUCUU------------UCAG- -5'
29549 5' -55.8 NC_006151.1 + 36647 0.73 0.559319
Target:  5'- gGcGGCGCCcc-CUCCGCCGGAGGGg- -3'
miRNA:   3'- gC-CCGCGGcaaGAGGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 103548 0.73 0.559319
Target:  5'- uGGGCGCCGggCagCCGCuCGGGGcgcuGGUCa -3'
miRNA:   3'- gCCCGCGGCaaGa-GGUG-GUCUU----UCAG- -5'
29549 5' -55.8 NC_006151.1 + 6503 0.71 0.649353
Target:  5'- uCGGGCGuCCG-UCgagggcugauagCCGCCGGAGAGcCg -3'
miRNA:   3'- -GCCCGC-GGCaAGa-----------GGUGGUCUUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 34013 0.7 0.69227
Target:  5'- cCGGcGCGCCGgcccggcccUCcCCGCCGGGAAGg- -3'
miRNA:   3'- -GCC-CGCGGCa--------AGaGGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 17108 0.69 0.751856
Target:  5'- gGGGCGCCGggggCUCCGgCGGc-GGUg -3'
miRNA:   3'- gCCCGCGGCaa--GAGGUgGUCuuUCAg -5'
29549 5' -55.8 NC_006151.1 + 68478 0.69 0.751856
Target:  5'- gCGGcGgGCCa--CUCCAgCCGGAGGGUCg -3'
miRNA:   3'- -GCC-CgCGGcaaGAGGU-GGUCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 32351 0.69 0.761469
Target:  5'- cCGaGGCGCCGgggCUuucuucccggaCCGCCGGGGAGg- -3'
miRNA:   3'- -GC-CCGCGGCaa-GA-----------GGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 49916 0.69 0.770967
Target:  5'- uCGGGCGCCGgcggCugacggacacgaUCCGCCGGGAccuGGcCg -3'
miRNA:   3'- -GCCCGCGGCaa--G------------AGGUGGUCUU---UCaG- -5'
29549 5' -55.8 NC_006151.1 + 5624 0.69 0.770967
Target:  5'- gGGGCGCCGccg-CCGCCGGGcgccGAGa- -3'
miRNA:   3'- gCCCGCGGCaagaGGUGGUCU----UUCag -5'
29549 5' -55.8 NC_006151.1 + 112115 0.69 0.770967
Target:  5'- aGGGCGCCcagCUCCACCcc---GUCa -3'
miRNA:   3'- gCCCGCGGcaaGAGGUGGucuuuCAG- -5'
29549 5' -55.8 NC_006151.1 + 23625 0.69 0.770967
Target:  5'- aGGGCGUa---CUCCAUCAGGGuGUCg -3'
miRNA:   3'- gCCCGCGgcaaGAGGUGGUCUUuCAG- -5'
29549 5' -55.8 NC_006151.1 + 74016 0.69 0.780339
Target:  5'- gGGGCGUCGUgcgCUCgGCCAuGuucGUCa -3'
miRNA:   3'- gCCCGCGGCAa--GAGgUGGU-CuuuCAG- -5'
29549 5' -55.8 NC_006151.1 + 100289 0.69 0.780339
Target:  5'- gCGGGCGCaCGgcCUCCGucuucgcgcCCGGGGAGg- -3'
miRNA:   3'- -GCCCGCG-GCaaGAGGU---------GGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 5010 0.69 0.780339
Target:  5'- gCGGGgGCCGggcgggCUCCggggccgggGCCGGGGAGg- -3'
miRNA:   3'- -GCCCgCGGCaa----GAGG---------UGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 65926 0.68 0.789578
Target:  5'- uCGGGCGCCccg--CCGCCGGcccAGUCc -3'
miRNA:   3'- -GCCCGCGGcaagaGGUGGUCuu-UCAG- -5'
29549 5' -55.8 NC_006151.1 + 137414 0.68 0.798673
Target:  5'- gGGGCGCCc-UCgccgCCGCCGcGGGGUCc -3'
miRNA:   3'- gCCCGCGGcaAGa---GGUGGUcUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 54614 0.68 0.807617
Target:  5'- cCGGuGCGCCGggCgcgCC-CCGGggGGa- -3'
miRNA:   3'- -GCC-CGCGGCaaGa--GGuGGUCuuUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.