Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29549 | 5' | -55.8 | NC_006151.1 | + | 91632 | 0.68 | 0.816399 |
Target: 5'- gGGGCucGCCGUcCUCCAgCAcGAAGGg- -3' miRNA: 3'- gCCCG--CGGCAaGAGGUgGU-CUUUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 57841 | 0.68 | 0.816399 |
Target: 5'- aGGGCGCaCGggugCUCCACgGcGcuGGUCg -3' miRNA: 3'- gCCCGCG-GCaa--GAGGUGgU-CuuUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 93759 | 0.68 | 0.825013 |
Target: 5'- gGGGCGCgGggCgUCCcCCAGguAGUUg -3' miRNA: 3'- gCCCGCGgCaaG-AGGuGGUCuuUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 19389 | 0.68 | 0.833449 |
Target: 5'- uGGGCGUgGc---CCGCCGGAcGGUCa -3' miRNA: 3'- gCCCGCGgCaagaGGUGGUCUuUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 55452 | 0.67 | 0.841701 |
Target: 5'- -cGGCGCCGccggCcCCGCCGGggGG-Cg -3' miRNA: 3'- gcCCGCGGCaa--GaGGUGGUCuuUCaG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 48406 | 0.67 | 0.841701 |
Target: 5'- uGGGCGUCGggCaCCGCCuaccuGGUCa -3' miRNA: 3'- gCCCGCGGCaaGaGGUGGucuu-UCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 40049 | 0.67 | 0.84976 |
Target: 5'- gGGGCGCCGUggagacCCACCGGcccgcGGGGg- -3' miRNA: 3'- gCCCGCGGCAaga---GGUGGUC-----UUUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 29092 | 0.67 | 0.852929 |
Target: 5'- cCGcGGCGaCCGUcccggaaaUUUCCgggaccgcaucgcggGCCGGGAAGUCg -3' miRNA: 3'- -GC-CCGC-GGCA--------AGAGG---------------UGGUCUUUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 27169 | 0.67 | 0.857621 |
Target: 5'- cCGaGGCGCCGcgugUCggggCGCCAGggGGcCg -3' miRNA: 3'- -GC-CCGCGGCa---AGag--GUGGUCuuUCaG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 71293 | 0.67 | 0.863761 |
Target: 5'- uCGGGgGCCGgcgagcaccgcgUCUUCACCGGcAAG-Cg -3' miRNA: 3'- -GCCCgCGGCa-----------AGAGGUGGUCuUUCaG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 39964 | 0.67 | 0.865275 |
Target: 5'- cCGGGCGCCGUcg-CCGCCGcGGGc--- -3' miRNA: 3'- -GCCCGCGGCAagaGGUGGU-CUUucag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 140067 | 0.67 | 0.865275 |
Target: 5'- gGcGGCGCgCGUgCUCCGCgAGAuGGUg -3' miRNA: 3'- gC-CCGCG-GCAaGAGGUGgUCUuUCAg -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 17303 | 0.67 | 0.872717 |
Target: 5'- cCGGGCuucgaGCCG---UCCGCCGGggGG-Cg -3' miRNA: 3'- -GCCCG-----CGGCaagAGGUGGUCuuUCaG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 58197 | 0.67 | 0.872717 |
Target: 5'- ---aCGCCGUgggCCACCAGgcAGUCg -3' miRNA: 3'- gcccGCGGCAagaGGUGGUCuuUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 136775 | 0.67 | 0.872717 |
Target: 5'- uGGGCGCCGg---CUACguGGAGGa- -3' miRNA: 3'- gCCCGCGGCaagaGGUGguCUUUCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 123959 | 0.67 | 0.875634 |
Target: 5'- aCGGGCGCCacccccaacgacgUCUCCG-CGGAGGcGUCc -3' miRNA: 3'- -GCCCGCGGca-----------AGAGGUgGUCUUU-CAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 20139 | 0.66 | 0.885562 |
Target: 5'- gCGGGCGCCGcgggggcggcgCguggaCCGCCGGGccgcgcccGGGUCg -3' miRNA: 3'- -GCCCGCGGCaa---------Ga----GGUGGUCU--------UUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 129779 | 0.66 | 0.886944 |
Target: 5'- aGGGCGUCGcUC-CCGCCGGcguGGg- -3' miRNA: 3'- gCCCGCGGCaAGaGGUGGUCuu-UCag -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 10944 | 0.66 | 0.886944 |
Target: 5'- uGGGCGCgCGUg-UCCGUguGAGAGUUu -3' miRNA: 3'- gCCCGCG-GCAagAGGUGguCUUUCAG- -5' |
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29549 | 5' | -55.8 | NC_006151.1 | + | 42487 | 0.66 | 0.889001 |
Target: 5'- cCGGGCGCCGUUUagCGCCucucuccucucucGUCa -3' miRNA: 3'- -GCCCGCGGCAAGagGUGGucuuu--------CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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