miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 5' -55.8 NC_006151.1 + 123959 0.67 0.875634
Target:  5'- aCGGGCGCCacccccaacgacgUCUCCG-CGGAGGcGUCc -3'
miRNA:   3'- -GCCCGCGGca-----------AGAGGUgGUCUUU-CAG- -5'
29549 5' -55.8 NC_006151.1 + 136775 0.67 0.872717
Target:  5'- uGGGCGCCGg---CUACguGGAGGa- -3'
miRNA:   3'- gCCCGCGGCaagaGGUGguCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 17303 0.67 0.872717
Target:  5'- cCGGGCuucgaGCCG---UCCGCCGGggGG-Cg -3'
miRNA:   3'- -GCCCG-----CGGCaagAGGUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 58197 0.67 0.872717
Target:  5'- ---aCGCCGUgggCCACCAGgcAGUCg -3'
miRNA:   3'- gcccGCGGCAagaGGUGGUCuuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 140067 0.67 0.865275
Target:  5'- gGcGGCGCgCGUgCUCCGCgAGAuGGUg -3'
miRNA:   3'- gC-CCGCG-GCAaGAGGUGgUCUuUCAg -5'
29549 5' -55.8 NC_006151.1 + 39964 0.67 0.865275
Target:  5'- cCGGGCGCCGUcg-CCGCCGcGGGc--- -3'
miRNA:   3'- -GCCCGCGGCAagaGGUGGU-CUUucag -5'
29549 5' -55.8 NC_006151.1 + 71293 0.67 0.863761
Target:  5'- uCGGGgGCCGgcgagcaccgcgUCUUCACCGGcAAG-Cg -3'
miRNA:   3'- -GCCCgCGGCa-----------AGAGGUGGUCuUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 27169 0.67 0.857621
Target:  5'- cCGaGGCGCCGcgugUCggggCGCCAGggGGcCg -3'
miRNA:   3'- -GC-CCGCGGCa---AGag--GUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 29092 0.67 0.852929
Target:  5'- cCGcGGCGaCCGUcccggaaaUUUCCgggaccgcaucgcggGCCGGGAAGUCg -3'
miRNA:   3'- -GC-CCGC-GGCA--------AGAGG---------------UGGUCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 40049 0.67 0.84976
Target:  5'- gGGGCGCCGUggagacCCACCGGcccgcGGGGg- -3'
miRNA:   3'- gCCCGCGGCAaga---GGUGGUC-----UUUCag -5'
29549 5' -55.8 NC_006151.1 + 48406 0.67 0.841701
Target:  5'- uGGGCGUCGggCaCCGCCuaccuGGUCa -3'
miRNA:   3'- gCCCGCGGCaaGaGGUGGucuu-UCAG- -5'
29549 5' -55.8 NC_006151.1 + 55452 0.67 0.841701
Target:  5'- -cGGCGCCGccggCcCCGCCGGggGG-Cg -3'
miRNA:   3'- gcCCGCGGCaa--GaGGUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 19389 0.68 0.833449
Target:  5'- uGGGCGUgGc---CCGCCGGAcGGUCa -3'
miRNA:   3'- gCCCGCGgCaagaGGUGGUCUuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 93759 0.68 0.825013
Target:  5'- gGGGCGCgGggCgUCCcCCAGguAGUUg -3'
miRNA:   3'- gCCCGCGgCaaG-AGGuGGUCuuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 91632 0.68 0.816399
Target:  5'- gGGGCucGCCGUcCUCCAgCAcGAAGGg- -3'
miRNA:   3'- gCCCG--CGGCAaGAGGUgGU-CUUUCag -5'
29549 5' -55.8 NC_006151.1 + 57841 0.68 0.816399
Target:  5'- aGGGCGCaCGggugCUCCACgGcGcuGGUCg -3'
miRNA:   3'- gCCCGCG-GCaa--GAGGUGgU-CuuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 54614 0.68 0.807617
Target:  5'- cCGGuGCGCCGggCgcgCC-CCGGggGGa- -3'
miRNA:   3'- -GCC-CGCGGCaaGa--GGuGGUCuuUCag -5'
29549 5' -55.8 NC_006151.1 + 137414 0.68 0.798673
Target:  5'- gGGGCGCCc-UCgccgCCGCCGcGGGGUCc -3'
miRNA:   3'- gCCCGCGGcaAGa---GGUGGUcUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 65926 0.68 0.789578
Target:  5'- uCGGGCGCCccg--CCGCCGGcccAGUCc -3'
miRNA:   3'- -GCCCGCGGcaagaGGUGGUCuu-UCAG- -5'
29549 5' -55.8 NC_006151.1 + 74016 0.69 0.780339
Target:  5'- gGGGCGUCGUgcgCUCgGCCAuGuucGUCa -3'
miRNA:   3'- gCCCGCGGCAa--GAGgUGGU-CuuuCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.