miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 5' -55.8 NC_006151.1 + 3027 0.66 0.912049
Target:  5'- gGGGCGCCcgguccaGUUC-CCGgcCCAGGcgugcGAGUCc -3'
miRNA:   3'- gCCCGCGG-------CAAGaGGU--GGUCU-----UUCAG- -5'
29549 5' -55.8 NC_006151.1 + 4864 0.66 0.910848
Target:  5'- -cGGCGCCGccgUagcggacgcggccgUCgGCCGGAGGGUCg -3'
miRNA:   3'- gcCCGCGGCaa-G--------------AGgUGGUCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 5010 0.69 0.780339
Target:  5'- gCGGGgGCCGggcgggCUCCggggccgggGCCGGGGAGg- -3'
miRNA:   3'- -GCCCgCGGCaa----GAGG---------UGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 5624 0.69 0.770967
Target:  5'- gGGGCGCCGccg-CCGCCGGGcgccGAGa- -3'
miRNA:   3'- gCCCGCGGCaagaGGUGGUCU----UUCag -5'
29549 5' -55.8 NC_006151.1 + 6503 0.71 0.649353
Target:  5'- uCGGGCGuCCG-UCgagggcugauagCCGCCGGAGAGcCg -3'
miRNA:   3'- -GCCCGC-GGCaAGa-----------GGUGGUCUUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 8299 0.66 0.912645
Target:  5'- gCGGGCGCCGcgUC-CCGCCcc-GAGcCc -3'
miRNA:   3'- -GCCCGCGGCa-AGaGGUGGucuUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 10944 0.66 0.886944
Target:  5'- uGGGCGCgCGUg-UCCGUguGAGAGUUu -3'
miRNA:   3'- gCCCGCG-GCAagAGGUGguCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 17108 0.69 0.751856
Target:  5'- gGGGCGCCGggggCUCCGgCGGc-GGUg -3'
miRNA:   3'- gCCCGCGGCaa--GAGGUgGUCuuUCAg -5'
29549 5' -55.8 NC_006151.1 + 17303 0.67 0.872717
Target:  5'- cCGGGCuucgaGCCG---UCCGCCGGggGG-Cg -3'
miRNA:   3'- -GCCCG-----CGGCaagAGGUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 18691 0.66 0.912645
Target:  5'- aCGGGCGCgCGggCggCGCCGGc--GUCg -3'
miRNA:   3'- -GCCCGCG-GCaaGagGUGGUCuuuCAG- -5'
29549 5' -55.8 NC_006151.1 + 19389 0.68 0.833449
Target:  5'- uGGGCGUgGc---CCGCCGGAcGGUCa -3'
miRNA:   3'- gCCCGCGgCaagaGGUGGUCUuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 20139 0.66 0.885562
Target:  5'- gCGGGCGCCGcgggggcggcgCguggaCCGCCGGGccgcgcccGGGUCg -3'
miRNA:   3'- -GCCCGCGGCaa---------Ga----GGUGGUCU--------UUCAG- -5'
29549 5' -55.8 NC_006151.1 + 22082 0.66 0.906573
Target:  5'- uGGGCGCgGUaCgugggCCGCCGGugGGcCa -3'
miRNA:   3'- gCCCGCGgCAaGa----GGUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 23625 0.69 0.770967
Target:  5'- aGGGCGUa---CUCCAUCAGGGuGUCg -3'
miRNA:   3'- gCCCGCGgcaaGAGGUGGUCUUuCAG- -5'
29549 5' -55.8 NC_006151.1 + 23904 0.66 0.90903
Target:  5'- uGGGCGUCGgUCgcgggcccgacgggCCGCCGGuc-GUCg -3'
miRNA:   3'- gCCCGCGGCaAGa-------------GGUGGUCuuuCAG- -5'
29549 5' -55.8 NC_006151.1 + 27169 0.67 0.857621
Target:  5'- cCGaGGCGCCGcgugUCggggCGCCAGggGGcCg -3'
miRNA:   3'- -GC-CCGCGGCa---AGag--GUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 29092 0.67 0.852929
Target:  5'- cCGcGGCGaCCGUcccggaaaUUUCCgggaccgcaucgcggGCCGGGAAGUCg -3'
miRNA:   3'- -GC-CCGC-GGCA--------AGAGG---------------UGGUCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 32351 0.69 0.761469
Target:  5'- cCGaGGCGCCGgggCUuucuucccggaCCGCCGGGGAGg- -3'
miRNA:   3'- -GC-CCGCGGCaa-GA-----------GGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 34013 0.7 0.69227
Target:  5'- cCGGcGCGCCGgcccggcccUCcCCGCCGGGAAGg- -3'
miRNA:   3'- -GCC-CGCGGCa--------AGaGGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 36647 0.73 0.559319
Target:  5'- gGcGGCGCCcc-CUCCGCCGGAGGGg- -3'
miRNA:   3'- gC-CCGCGGcaaGAGGUGGUCUUUCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.