miRNA display CGI


Results 41 - 56 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 5' -55.8 NC_006151.1 + 91632 0.68 0.816399
Target:  5'- gGGGCucGCCGUcCUCCAgCAcGAAGGg- -3'
miRNA:   3'- gCCCG--CGGCAaGAGGUgGU-CUUUCag -5'
29549 5' -55.8 NC_006151.1 + 93759 0.68 0.825013
Target:  5'- gGGGCGCgGggCgUCCcCCAGguAGUUg -3'
miRNA:   3'- gCCCGCGgCaaG-AGGuGGUCuuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 97875 0.66 0.906573
Target:  5'- -cGGCgGCCG----CCACCAGGAAGUUg -3'
miRNA:   3'- gcCCG-CGGCaagaGGUGGUCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 98655 0.66 0.900263
Target:  5'- gCGGGCG-CGcgCUCCGCCGacGAcGUCc -3'
miRNA:   3'- -GCCCGCgGCaaGAGGUGGUcuUU-CAG- -5'
29549 5' -55.8 NC_006151.1 + 100289 0.69 0.780339
Target:  5'- gCGGGCGCaCGgcCUCCGucuucgcgcCCGGGGAGg- -3'
miRNA:   3'- -GCCCGCG-GCaaGAGGU---------GGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 103548 0.73 0.559319
Target:  5'- uGGGCGCCGggCagCCGCuCGGGGcgcuGGUCa -3'
miRNA:   3'- gCCCGCGGCaaGa-GGUG-GUCUU----UCAG- -5'
29549 5' -55.8 NC_006151.1 + 105190 0.66 0.912645
Target:  5'- uCGaGGCGCUGcagacgCUgCGCCAGGAGG-Cg -3'
miRNA:   3'- -GC-CCGCGGCaa----GAgGUGGUCUUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 112115 0.69 0.770967
Target:  5'- aGGGCGCCcagCUCCACCcc---GUCa -3'
miRNA:   3'- gCCCGCGGcaaGAGGUGGucuuuCAG- -5'
29549 5' -55.8 NC_006151.1 + 123959 0.67 0.875634
Target:  5'- aCGGGCGCCacccccaacgacgUCUCCG-CGGAGGcGUCc -3'
miRNA:   3'- -GCCCGCGGca-----------AGAGGUgGUCUUU-CAG- -5'
29549 5' -55.8 NC_006151.1 + 127842 0.66 0.912645
Target:  5'- gGcGGCGUCGcggCUgCGCCGGAGGGg- -3'
miRNA:   3'- gC-CCGCGGCaa-GAgGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 129779 0.66 0.886944
Target:  5'- aGGGCGUCGcUC-CCGCCGGcguGGg- -3'
miRNA:   3'- gCCCGCGGCaAGaGGUGGUCuu-UCag -5'
29549 5' -55.8 NC_006151.1 + 135177 0.76 0.382314
Target:  5'- aCGGGCGCCGgcugCcgCCGCCGGGccAGUCc -3'
miRNA:   3'- -GCCCGCGGCaa--Ga-GGUGGUCUu-UCAG- -5'
29549 5' -55.8 NC_006151.1 + 136775 0.67 0.872717
Target:  5'- uGGGCGCCGg---CUACguGGAGGa- -3'
miRNA:   3'- gCCCGCGGCaagaGGUGguCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 137414 0.68 0.798673
Target:  5'- gGGGCGCCc-UCgccgCCGCCGcGGGGUCc -3'
miRNA:   3'- gCCCGCGGcaAGa---GGUGGUcUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 137875 0.66 0.905953
Target:  5'- aCGGGCgcagccugcggcuGCCcUUCUUCGCCA--AGGUCg -3'
miRNA:   3'- -GCCCG-------------CGGcAAGAGGUGGUcuUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 140067 0.67 0.865275
Target:  5'- gGcGGCGCgCGUgCUCCGCgAGAuGGUg -3'
miRNA:   3'- gC-CCGCG-GCAaGAGGUGgUCUuUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.