miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 5' -55.8 NC_006151.1 + 69467 0.66 0.912645
Target:  5'- gCGGGCGCCGgcaccgUCgccgCCGCCuc-GAG-Cg -3'
miRNA:   3'- -GCCCGCGGCa-----AGa---GGUGGucuUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 68478 0.69 0.751856
Target:  5'- gCGGcGgGCCa--CUCCAgCCGGAGGGUCg -3'
miRNA:   3'- -GCC-CgCGGcaaGAGGU-GGUCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 65926 0.68 0.789578
Target:  5'- uCGGGCGCCccg--CCGCCGGcccAGUCc -3'
miRNA:   3'- -GCCCGCGGcaagaGGUGGUCuu-UCAG- -5'
29549 5' -55.8 NC_006151.1 + 58197 0.67 0.872717
Target:  5'- ---aCGCCGUgggCCACCAGgcAGUCg -3'
miRNA:   3'- gcccGCGGCAagaGGUGGUCuuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 57841 0.68 0.816399
Target:  5'- aGGGCGCaCGggugCUCCACgGcGcuGGUCg -3'
miRNA:   3'- gCCCGCG-GCaa--GAGGUGgU-CuuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 56992 0.66 0.89372
Target:  5'- aGGGCGgCGaagaugggCUCCauguggGCCAGAcAGUCu -3'
miRNA:   3'- gCCCGCgGCaa------GAGG------UGGUCUuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 55904 0.66 0.906573
Target:  5'- cCGGGCGaCCGagcggCUCCGCgAuGGAGGcCg -3'
miRNA:   3'- -GCCCGC-GGCaa---GAGGUGgU-CUUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 55452 0.67 0.841701
Target:  5'- -cGGCGCCGccggCcCCGCCGGggGG-Cg -3'
miRNA:   3'- gcCCGCGGCaa--GaGGUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 54614 0.68 0.807617
Target:  5'- cCGGuGCGCCGggCgcgCC-CCGGggGGa- -3'
miRNA:   3'- -GCC-CGCGGCaaGa--GGuGGUCuuUCag -5'
29549 5' -55.8 NC_006151.1 + 50352 0.66 0.900263
Target:  5'- gCGGccuccCGCCGcgUCUCCGCCGGcgGGg- -3'
miRNA:   3'- -GCCc----GCGGCa-AGAGGUGGUCuuUCag -5'
29549 5' -55.8 NC_006151.1 + 49916 0.69 0.770967
Target:  5'- uCGGGCGCCGgcggCugacggacacgaUCCGCCGGGAccuGGcCg -3'
miRNA:   3'- -GCCCGCGGCaa--G------------AGGUGGUCUU---UCaG- -5'
29549 5' -55.8 NC_006151.1 + 48406 0.67 0.841701
Target:  5'- uGGGCGUCGggCaCCGCCuaccuGGUCa -3'
miRNA:   3'- gCCCGCGGCaaGaGGUGGucuu-UCAG- -5'
29549 5' -55.8 NC_006151.1 + 42487 0.66 0.889001
Target:  5'- cCGGGCGCCGUUUagCGCCucucuccucucucGUCa -3'
miRNA:   3'- -GCCCGCGGCAAGagGUGGucuuu--------CAG- -5'
29549 5' -55.8 NC_006151.1 + 40049 0.67 0.84976
Target:  5'- gGGGCGCCGUggagacCCACCGGcccgcGGGGg- -3'
miRNA:   3'- gCCCGCGGCAaga---GGUGGUC-----UUUCag -5'
29549 5' -55.8 NC_006151.1 + 39964 0.67 0.865275
Target:  5'- cCGGGCGCCGUcg-CCGCCGcGGGc--- -3'
miRNA:   3'- -GCCCGCGGCAagaGGUGGU-CUUucag -5'
29549 5' -55.8 NC_006151.1 + 37154 0.66 0.89372
Target:  5'- cCGGGcCGCCaccgUCUCCGCCGGc----- -3'
miRNA:   3'- -GCCC-GCGGca--AGAGGUGGUCuuucag -5'
29549 5' -55.8 NC_006151.1 + 36647 0.73 0.559319
Target:  5'- gGcGGCGCCcc-CUCCGCCGGAGGGg- -3'
miRNA:   3'- gC-CCGCGGcaaGAGGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 34013 0.7 0.69227
Target:  5'- cCGGcGCGCCGgcccggcccUCcCCGCCGGGAAGg- -3'
miRNA:   3'- -GCC-CGCGGCa--------AGaGGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 32351 0.69 0.761469
Target:  5'- cCGaGGCGCCGgggCUuucuucccggaCCGCCGGGGAGg- -3'
miRNA:   3'- -GC-CCGCGGCaa-GA-----------GGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 29092 0.67 0.852929
Target:  5'- cCGcGGCGaCCGUcccggaaaUUUCCgggaccgcaucgcggGCCGGGAAGUCg -3'
miRNA:   3'- -GC-CCGC-GGCA--------AGAGG---------------UGGUCUUUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.