miRNA display CGI


Results 41 - 56 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29549 5' -55.8 NC_006151.1 + 127842 0.66 0.912645
Target:  5'- gGcGGCGUCGcggCUgCGCCGGAGGGg- -3'
miRNA:   3'- gC-CCGCGGCaa-GAgGUGGUCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 50352 0.66 0.900263
Target:  5'- gCGGccuccCGCCGcgUCUCCGCCGGcgGGg- -3'
miRNA:   3'- -GCCc----GCGGCa-AGAGGUGGUCuuUCag -5'
29549 5' -55.8 NC_006151.1 + 37154 0.66 0.89372
Target:  5'- cCGGGcCGCCaccgUCUCCGCCGGc----- -3'
miRNA:   3'- -GCCC-GCGGca--AGAGGUGGUCuuucag -5'
29549 5' -55.8 NC_006151.1 + 71293 0.67 0.863761
Target:  5'- uCGGGgGCCGgcgagcaccgcgUCUUCACCGGcAAG-Cg -3'
miRNA:   3'- -GCCCgCGGCa-----------AGAGGUGGUCuUUCaG- -5'
29549 5' -55.8 NC_006151.1 + 39964 0.67 0.865275
Target:  5'- cCGGGCGCCGUcg-CCGCCGcGGGc--- -3'
miRNA:   3'- -GCCCGCGGCAagaGGUGGU-CUUucag -5'
29549 5' -55.8 NC_006151.1 + 140067 0.67 0.865275
Target:  5'- gGcGGCGCgCGUgCUCCGCgAGAuGGUg -3'
miRNA:   3'- gC-CCGCG-GCAaGAGGUGgUCUuUCAg -5'
29549 5' -55.8 NC_006151.1 + 58197 0.67 0.872717
Target:  5'- ---aCGCCGUgggCCACCAGgcAGUCg -3'
miRNA:   3'- gcccGCGGCAagaGGUGGUCuuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 17303 0.67 0.872717
Target:  5'- cCGGGCuucgaGCCG---UCCGCCGGggGG-Cg -3'
miRNA:   3'- -GCCCG-----CGGCaagAGGUGGUCuuUCaG- -5'
29549 5' -55.8 NC_006151.1 + 136775 0.67 0.872717
Target:  5'- uGGGCGCCGg---CUACguGGAGGa- -3'
miRNA:   3'- gCCCGCGGCaagaGGUGguCUUUCag -5'
29549 5' -55.8 NC_006151.1 + 123959 0.67 0.875634
Target:  5'- aCGGGCGCCacccccaacgacgUCUCCG-CGGAGGcGUCc -3'
miRNA:   3'- -GCCCGCGGca-----------AGAGGUgGUCUUU-CAG- -5'
29549 5' -55.8 NC_006151.1 + 20139 0.66 0.885562
Target:  5'- gCGGGCGCCGcgggggcggcgCguggaCCGCCGGGccgcgcccGGGUCg -3'
miRNA:   3'- -GCCCGCGGCaa---------Ga----GGUGGUCU--------UUCAG- -5'
29549 5' -55.8 NC_006151.1 + 129779 0.66 0.886944
Target:  5'- aGGGCGUCGcUC-CCGCCGGcguGGg- -3'
miRNA:   3'- gCCCGCGGCaAGaGGUGGUCuu-UCag -5'
29549 5' -55.8 NC_006151.1 + 10944 0.66 0.886944
Target:  5'- uGGGCGCgCGUg-UCCGUguGAGAGUUu -3'
miRNA:   3'- gCCCGCG-GCAagAGGUGguCUUUCAG- -5'
29549 5' -55.8 NC_006151.1 + 42487 0.66 0.889001
Target:  5'- cCGGGCGCCGUUUagCGCCucucuccucucucGUCa -3'
miRNA:   3'- -GCCCGCGGCAAGagGUGGucuuu--------CAG- -5'
29549 5' -55.8 NC_006151.1 + 56992 0.66 0.89372
Target:  5'- aGGGCGgCGaagaugggCUCCauguggGCCAGAcAGUCu -3'
miRNA:   3'- gCCCGCgGCaa------GAGG------UGGUCUuUCAG- -5'
29549 5' -55.8 NC_006151.1 + 18691 0.66 0.912645
Target:  5'- aCGGGCGCgCGggCggCGCCGGc--GUCg -3'
miRNA:   3'- -GCCCGCG-GCaaGagGUGGUCuuuCAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.