miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29551 3' -58 NC_006151.1 + 2544 0.71 0.532853
Target:  5'- aGCGCUGGCGGGCcauguccUUGC-AGCCguCCAc -3'
miRNA:   3'- -UGCGACCGCCUGaa-----AACGcUCGG--GGU- -5'
29551 3' -58 NC_006151.1 + 3144 0.67 0.725046
Target:  5'- gGCGCccucGGCGGGCUcggcGCaGAGCUCCu -3'
miRNA:   3'- -UGCGa---CCGCCUGAaaa-CG-CUCGGGGu -5'
29551 3' -58 NC_006151.1 + 3829 0.66 0.782524
Target:  5'- gUGCUGGCgGGGCUg--GaGGGCCCgGa -3'
miRNA:   3'- uGCGACCG-CCUGAaaaCgCUCGGGgU- -5'
29551 3' -58 NC_006151.1 + 3970 0.67 0.715132
Target:  5'- cGCGC-GGCGGcCUcg-GCGAGCCggCCGc -3'
miRNA:   3'- -UGCGaCCGCCuGAaaaCGCUCGG--GGU- -5'
29551 3' -58 NC_006151.1 + 4226 0.67 0.744624
Target:  5'- gGCGCgGGCGGGC----GCGGGCagCCGg -3'
miRNA:   3'- -UGCGaCCGCCUGaaaaCGCUCGg-GGU- -5'
29551 3' -58 NC_006151.1 + 4814 0.66 0.773229
Target:  5'- cGCGgcCUGGCGGACguc-GUccucgucccaGAGCCCCu -3'
miRNA:   3'- -UGC--GACCGCCUGaaaaCG----------CUCGGGGu -5'
29551 3' -58 NC_006151.1 + 5367 0.7 0.583005
Target:  5'- gGCGCcGGCgGGGCUgucucUGCGGgggcGCCCCGc -3'
miRNA:   3'- -UGCGaCCG-CCUGAaa---ACGCU----CGGGGU- -5'
29551 3' -58 NC_006151.1 + 5671 0.66 0.800701
Target:  5'- -gGCUGG-GGAa----GCGGGCCCCc -3'
miRNA:   3'- ugCGACCgCCUgaaaaCGCUCGGGGu -5'
29551 3' -58 NC_006151.1 + 20102 0.66 0.818269
Target:  5'- -gGCUGGgGGACgg--GC--GCCCCGg -3'
miRNA:   3'- ugCGACCgCCUGaaaaCGcuCGGGGU- -5'
29551 3' -58 NC_006151.1 + 23045 0.68 0.705148
Target:  5'- -aGCgGGCGGcCgcg-GCGAGCCCaCGa -3'
miRNA:   3'- ugCGaCCGCCuGaaaaCGCUCGGG-GU- -5'
29551 3' -58 NC_006151.1 + 23410 0.66 0.804265
Target:  5'- aGCGCUGGUGGuCgccggccguggggGCGAugggugggagggugGCCCCGg -3'
miRNA:   3'- -UGCGACCGCCuGaaaa---------CGCU--------------CGGGGU- -5'
29551 3' -58 NC_006151.1 + 28804 0.66 0.788951
Target:  5'- cCGCgGGaCGGGCg-UccgggaccggccaaUGCGGGCCCCGg -3'
miRNA:   3'- uGCGaCC-GCCUGaaA--------------ACGCUCGGGGU- -5'
29551 3' -58 NC_006151.1 + 29063 0.73 0.402864
Target:  5'- -aGUUGGCGG-Cgcc-GCGGGCCCCGa -3'
miRNA:   3'- ugCGACCGCCuGaaaaCGCUCGGGGU- -5'
29551 3' -58 NC_006151.1 + 31253 0.66 0.791684
Target:  5'- -aGCgGGCGGGCga--GCcgGGGCCCCc -3'
miRNA:   3'- ugCGaCCGCCUGaaaaCG--CUCGGGGu -5'
29551 3' -58 NC_006151.1 + 37966 0.71 0.532853
Target:  5'- -aGCUGGCGGACgccUGCGuccuGGCCUg- -3'
miRNA:   3'- ugCGACCGCCUGaaaACGC----UCGGGgu -5'
29551 3' -58 NC_006151.1 + 38387 0.68 0.695102
Target:  5'- gGCGCcGGCGG-Cg---GCGGGCgCCCc -3'
miRNA:   3'- -UGCGaCCGCCuGaaaaCGCUCG-GGGu -5'
29551 3' -58 NC_006151.1 + 39471 0.69 0.603358
Target:  5'- uGCGCUGGCccGGGugcc-GCGAGCUCCGc -3'
miRNA:   3'- -UGCGACCG--CCUgaaaaCGCUCGGGGU- -5'
29551 3' -58 NC_006151.1 + 39739 0.67 0.754269
Target:  5'- cGCGCUcGGgcucggggaccCGGACUUUgacGCGGGCgCCGc -3'
miRNA:   3'- -UGCGA-CC-----------GCCUGAAAa--CGCUCGgGGU- -5'
29551 3' -58 NC_006151.1 + 46371 0.78 0.200544
Target:  5'- gAUGC-GGCGGAUgcagagGCGAGCCCCGa -3'
miRNA:   3'- -UGCGaCCGCCUGaaaa--CGCUCGGGGU- -5'
29551 3' -58 NC_006151.1 + 46637 0.66 0.79891
Target:  5'- gACGCggccggacgGGCGGACaggcccaggGCGAGaCUCCGg -3'
miRNA:   3'- -UGCGa--------CCGCCUGaaaa-----CGCUC-GGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.