miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29551 5' -62.6 NC_006151.1 + 101096 0.71 0.341206
Target:  5'- aCCUGGGGCccgGGUcGGgcguCUCGUGcCUGCg -3'
miRNA:   3'- -GGGCCCCGa--CCA-CCac--GAGCGC-GACG- -5'
29551 5' -62.6 NC_006151.1 + 100616 0.7 0.371377
Target:  5'- uCCUGGcGcGCUGGgaccUGGUcagcGC-CGCGCUGCg -3'
miRNA:   3'- -GGGCC-C-CGACC----ACCA----CGaGCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 98354 0.73 0.25568
Target:  5'- gCCCGcGGGCgugcgcgGGcucUGG-GCgcgCGCGCUGCg -3'
miRNA:   3'- -GGGC-CCCGa------CC---ACCaCGa--GCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 92473 0.67 0.540655
Target:  5'- gCCUGGGGgUGGacuacucggaguuccUGGccGCguucgUGCGCUGCc -3'
miRNA:   3'- -GGGCCCCgACC---------------ACCa-CGa----GCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 89966 0.66 0.604394
Target:  5'- aCCGGGcgcgGCUGGcgacguaGGUGCaCGUGCcGCg -3'
miRNA:   3'- gGGCCC----CGACCa------CCACGaGCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 85826 0.68 0.490239
Target:  5'- aCCGGuGcGcCUGGUGGcGCUgGaGCUGCa -3'
miRNA:   3'- gGGCC-C-C-GACCACCaCGAgCgCGACG- -5'
29551 5' -62.6 NC_006151.1 + 85757 0.69 0.411569
Target:  5'- uCCCcGGGCUGGccGcGCUgGCGCUGg -3'
miRNA:   3'- -GGGcCCCGACCacCaCGAgCGCGACg -5'
29551 5' -62.6 NC_006151.1 + 84728 0.66 0.59464
Target:  5'- gCCGaGGcGCUcGUGGUGCUCgaggagacgGCGC-GCg -3'
miRNA:   3'- gGGC-CC-CGAcCACCACGAG---------CGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 82408 0.69 0.454346
Target:  5'- gCCCGaGGGCggccccgagaGGcgcgGGcGCUCGCGCggGCg -3'
miRNA:   3'- -GGGC-CCCGa---------CCa---CCaCGAGCGCGa-CG- -5'
29551 5' -62.6 NC_006151.1 + 80945 0.68 0.490239
Target:  5'- gCUGGGGaUGGUGGaGUUgGCGCcgGCc -3'
miRNA:   3'- gGGCCCCgACCACCaCGAgCGCGa-CG- -5'
29551 5' -62.6 NC_006151.1 + 78700 0.68 0.509605
Target:  5'- gCCGGGGCcucgucgccgcgacgGcgcccGUGGgGCgCGCGCUGCg -3'
miRNA:   3'- gGGCCCCGa--------------C-----CACCaCGaGCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 74558 0.66 0.604394
Target:  5'- uCCUGGGGCUGGUugcccagcgGGUcCcCGgGCaGCg -3'
miRNA:   3'- -GGGCCCCGACCA---------CCAcGaGCgCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 71787 0.66 0.584913
Target:  5'- gCgGGGGCUGccgcaccagcUGGccgaGCUCGCGCgugGCg -3'
miRNA:   3'- gGgCCCCGACc---------ACCa---CGAGCGCGa--CG- -5'
29551 5' -62.6 NC_006151.1 + 69130 0.71 0.34858
Target:  5'- cUCCGcGGGCaGGgcgcgcgGGUGCUCGaCGCcgUGCc -3'
miRNA:   3'- -GGGC-CCCGaCCa------CCACGAGC-GCG--ACG- -5'
29551 5' -62.6 NC_006151.1 + 64493 0.67 0.565557
Target:  5'- gCCCGcGGGCgcgGGcGGcggGCgCGCGCcGCc -3'
miRNA:   3'- -GGGC-CCCGa--CCaCCa--CGaGCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 61793 0.68 0.484769
Target:  5'- gCCGGccGGCUGGcguuccagcccagcgUGGUGCUCuaCGCgGCg -3'
miRNA:   3'- gGGCC--CCGACC---------------ACCACGAGc-GCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 59145 0.69 0.428383
Target:  5'- gCCCGcGGGCgGGUccaGGccgGCgUCGCGCaGCa -3'
miRNA:   3'- -GGGC-CCCGaCCA---CCa--CG-AGCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 57833 0.67 0.575216
Target:  5'- cCCCGcggaGGGCgcacgGGUGCUCcacgGCGCUGg -3'
miRNA:   3'- -GGGC----CCCGacca-CCACGAG----CGCGACg -5'
29551 5' -62.6 NC_006151.1 + 56583 0.68 0.49942
Target:  5'- gCCCGacGGGCUGGUGc-GgaCGCGCcccgGCg -3'
miRNA:   3'- -GGGC--CCCGACCACcaCgaGCGCGa---CG- -5'
29551 5' -62.6 NC_006151.1 + 55964 0.69 0.414899
Target:  5'- uCCCGcGGCUGGUgugcgaggugcgcgaGGUGCcCGgGCUGa -3'
miRNA:   3'- -GGGCcCCGACCA---------------CCACGaGCgCGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.