miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29551 5' -62.6 NC_006151.1 + 64493 0.67 0.565557
Target:  5'- gCCCGcGGGCgcgGGcGGcggGCgCGCGCcGCc -3'
miRNA:   3'- -GGGC-CCCGa--CCaCCa--CGaGCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 43379 0.67 0.564593
Target:  5'- gUCgGGGGC-GGUGGUggccgucGCUCGUgGCcgGCa -3'
miRNA:   3'- -GGgCCCCGaCCACCA-------CGAGCG-CGa-CG- -5'
29551 5' -62.6 NC_006151.1 + 50442 0.67 0.56363
Target:  5'- gCCGGcGGcCUGGgcaccgcccgcgGGcGCUCGCGCcaGCg -3'
miRNA:   3'- gGGCC-CC-GACCa-----------CCaCGAGCGCGa-CG- -5'
29551 5' -62.6 NC_006151.1 + 141694 0.67 0.55594
Target:  5'- cCCaCGGcGGCUGGcGGcGgaCGCGgUGCc -3'
miRNA:   3'- -GG-GCC-CCGACCaCCaCgaGCGCgACG- -5'
29551 5' -62.6 NC_006151.1 + 113325 0.67 0.546371
Target:  5'- gCUGGGGCccgUGcUGGcGCUgGCGCUGa -3'
miRNA:   3'- gGGCCCCG---ACcACCaCGAgCGCGACg -5'
29551 5' -62.6 NC_006151.1 + 23455 0.67 0.546371
Target:  5'- cCCCGGGGCgGGUGaucGUGagccCGUGCuucaUGCc -3'
miRNA:   3'- -GGGCCCCGaCCAC---CACga--GCGCG----ACG- -5'
29551 5' -62.6 NC_006151.1 + 54631 0.67 0.546371
Target:  5'- cCCCGGGGggaagcGGcGGcGCgaGCGCUGCg -3'
miRNA:   3'- -GGGCCCCga----CCaCCaCGagCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 92473 0.67 0.540655
Target:  5'- gCCUGGGGgUGGacuacucggaguuccUGGccGCguucgUGCGCUGCc -3'
miRNA:   3'- -GGGCCCCgACC---------------ACCa-CGa----GCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 17105 0.67 0.536855
Target:  5'- gUCGGGGCgccGG-GG-GCUCcggcggcgGUGCUGCg -3'
miRNA:   3'- gGGCCCCGa--CCaCCaCGAG--------CGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 103716 0.67 0.527398
Target:  5'- aCCCGGaGCUGGgcuuccUGGagccGCUgGCGCgGCa -3'
miRNA:   3'- -GGGCCcCGACC------ACCa---CGAgCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 44887 0.68 0.518003
Target:  5'- cCUCGGcGGUgugcGGUGGUGUgugUGCGCgagagggGCg -3'
miRNA:   3'- -GGGCC-CCGa---CCACCACGa--GCGCGa------CG- -5'
29551 5' -62.6 NC_006151.1 + 78700 0.68 0.509605
Target:  5'- gCCGGGGCcucgucgccgcgacgGcgcccGUGGgGCgCGCGCUGCg -3'
miRNA:   3'- gGGCCCCGa--------------C-----CACCaCGaGCGCGACG- -5'
29551 5' -62.6 NC_006151.1 + 52379 0.68 0.508676
Target:  5'- cCCCGGGGCccgcgGG-GGcgGCggGCGCcGCc -3'
miRNA:   3'- -GGGCCCCGa----CCaCCa-CGagCGCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 47212 0.68 0.508676
Target:  5'- uCUCGGGGCUcucgggucGGcUGGgcgGCUCG-GCUGg -3'
miRNA:   3'- -GGGCCCCGA--------CC-ACCa--CGAGCgCGACg -5'
29551 5' -62.6 NC_006151.1 + 49718 0.68 0.49942
Target:  5'- cCCCGGGag-GG-GGUGCUCG-GgaGCg -3'
miRNA:   3'- -GGGCCCcgaCCaCCACGAGCgCgaCG- -5'
29551 5' -62.6 NC_006151.1 + 56583 0.68 0.49942
Target:  5'- gCCCGacGGGCUGGUGc-GgaCGCGCcccgGCg -3'
miRNA:   3'- -GGGC--CCCGACCACcaCgaGCGCGa---CG- -5'
29551 5' -62.6 NC_006151.1 + 85826 0.68 0.490239
Target:  5'- aCCGGuGcGcCUGGUGGcGCUgGaGCUGCa -3'
miRNA:   3'- gGGCC-C-C-GACCACCaCGAgCgCGACG- -5'
29551 5' -62.6 NC_006151.1 + 80945 0.68 0.490239
Target:  5'- gCUGGGGaUGGUGGaGUUgGCGCcgGCc -3'
miRNA:   3'- gGGCCCCgACCACCaCGAgCGCGa-CG- -5'
29551 5' -62.6 NC_006151.1 + 61793 0.68 0.484769
Target:  5'- gCCGGccGGCUGGcguuccagcccagcgUGGUGCUCuaCGCgGCg -3'
miRNA:   3'- gGGCC--CCGACC---------------ACCACGAGc-GCGaCG- -5'
29551 5' -62.6 NC_006151.1 + 103898 0.68 0.481138
Target:  5'- aCCUGGcGCUGGaGGUgGCgCGCGCgGCc -3'
miRNA:   3'- -GGGCCcCGACCaCCA-CGaGCGCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.