miRNA display CGI


Results 1 - 20 of 331 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29554 5' -64.3 NC_006151.1 + 59333 0.66 0.555816
Target:  5'- cGCCCGCCcccagCGcgcucagggccgcgcGCACGGGgCGCcGCGc -3'
miRNA:   3'- cCGGGCGGa----GCu--------------CGUGCCC-GCGaCGC- -5'
29554 5' -64.3 NC_006151.1 + 141990 0.66 0.554866
Target:  5'- cGGCCCGggaaaaaGAGCGCGGcGUGggGCGg -3'
miRNA:   3'- -CCGGGCggag---CUCGUGCC-CGCgaCGC- -5'
29554 5' -64.3 NC_006151.1 + 89933 0.66 0.554866
Target:  5'- aGCCgCGCCccagguccgCGGGCGCggccaggaaccGGGCGCggcugGCGa -3'
miRNA:   3'- cCGG-GCGGa--------GCUCGUG-----------CCCGCGa----CGC- -5'
29554 5' -64.3 NC_006151.1 + 131534 0.66 0.554866
Target:  5'- aGCgCUGCUcuugCGAGCGCcucGGGCGCcGCa -3'
miRNA:   3'- cCG-GGCGGa---GCUCGUG---CCCGCGaCGc -5'
29554 5' -64.3 NC_006151.1 + 57174 0.66 0.554866
Target:  5'- cGGCgCgGCCcagaagUCGGGguCGuGGCGCgagGCGa -3'
miRNA:   3'- -CCG-GgCGG------AGCUCguGC-CCGCGa--CGC- -5'
29554 5' -64.3 NC_006151.1 + 57963 0.66 0.554866
Target:  5'- aGCCCGUCcgUGAGC-CGGuGgGCgGCGa -3'
miRNA:   3'- cCGGGCGGa-GCUCGuGCC-CgCGaCGC- -5'
29554 5' -64.3 NC_006151.1 + 65987 0.66 0.554866
Target:  5'- cGCCgGCCgCGAGCGCGuccuccgcGGCGUcgaGCGc -3'
miRNA:   3'- cCGGgCGGaGCUCGUGC--------CCGCGa--CGC- -5'
29554 5' -64.3 NC_006151.1 + 111428 0.66 0.554866
Target:  5'- aGCgCUGCCgcaucUCG-GCGCGguccaggaGGCGCUGCGu -3'
miRNA:   3'- cCG-GGCGG-----AGCuCGUGC--------CCGCGACGC- -5'
29554 5' -64.3 NC_006151.1 + 134200 0.66 0.554866
Target:  5'- uGCUCGUCgCGcAGCGCGGGgGCggucGCa -3'
miRNA:   3'- cCGGGCGGaGC-UCGUGCCCgCGa---CGc -5'
29554 5' -64.3 NC_006151.1 + 22164 0.66 0.554866
Target:  5'- -cCCCGCa-CGGGUccuccaGCGGGCGCgUGUGg -3'
miRNA:   3'- ccGGGCGgaGCUCG------UGCCCGCG-ACGC- -5'
29554 5' -64.3 NC_006151.1 + 30581 0.66 0.554866
Target:  5'- cGGCCC-CgUCGGGCGCaGGGaucguagcaaaCGCggGCGg -3'
miRNA:   3'- -CCGGGcGgAGCUCGUG-CCC-----------GCGa-CGC- -5'
29554 5' -64.3 NC_006151.1 + 37987 0.66 0.554866
Target:  5'- uGGCCUGCCgcggcguccUCGAGCGCc--UGCUGCc -3'
miRNA:   3'- -CCGGGCGG---------AGCUCGUGcccGCGACGc -5'
29554 5' -64.3 NC_006151.1 + 64217 0.66 0.554866
Target:  5'- cGGCgugggCGCCUCGGcGUACaGGGCcGCgacgGCGg -3'
miRNA:   3'- -CCGg----GCGGAGCU-CGUG-CCCG-CGa---CGC- -5'
29554 5' -64.3 NC_006151.1 + 121642 0.66 0.554866
Target:  5'- uGGCCUcUCUCGcGGCggACGGGCGg-GCGg -3'
miRNA:   3'- -CCGGGcGGAGC-UCG--UGCCCGCgaCGC- -5'
29554 5' -64.3 NC_006151.1 + 96662 0.66 0.553917
Target:  5'- gGGCCCGggcgacguCCUCgGGGCAgGcGGCGUcgaggaaUGCGu -3'
miRNA:   3'- -CCGGGC--------GGAG-CUCGUgC-CCGCG-------ACGC- -5'
29554 5' -64.3 NC_006151.1 + 121384 0.66 0.545399
Target:  5'- aGGagaCCGCCuUCGAcuUugGGGC-CUGCGg -3'
miRNA:   3'- -CCg--GGCGG-AGCUc-GugCCCGcGACGC- -5'
29554 5' -64.3 NC_006151.1 + 92214 0.66 0.545399
Target:  5'- cGGCCgCGCUg-GAGCACGa-UGCUGCa -3'
miRNA:   3'- -CCGG-GCGGagCUCGUGCccGCGACGc -5'
29554 5' -64.3 NC_006151.1 + 66077 0.66 0.545399
Target:  5'- cGG-CCGCCU-GGGCuuccacGCGGGC-CUGCa -3'
miRNA:   3'- -CCgGGCGGAgCUCG------UGCCCGcGACGc -5'
29554 5' -64.3 NC_006151.1 + 64739 0.66 0.545399
Target:  5'- gGGCCaCGagCUCGAGCAgCGGG-GCcaccgUGCGc -3'
miRNA:   3'- -CCGG-GCg-GAGCUCGU-GCCCgCG-----ACGC- -5'
29554 5' -64.3 NC_006151.1 + 39883 0.66 0.545399
Target:  5'- gGGCCUGCCggcCGAguuGCGCGccuucuGCGCcGCGg -3'
miRNA:   3'- -CCGGGCGGa--GCU---CGUGCc-----CGCGaCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.