miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29555 3' -56.6 NC_006151.1 + 31339 0.66 0.893057
Target:  5'- cCU-CGGCGcCGUGGgcccgaccccgguccGCGCCGGCa-- -3'
miRNA:   3'- aGAuGCCGCaGUACC---------------UGCGGUCGcac -5'
29555 3' -56.6 NC_006151.1 + 118115 0.66 0.883539
Target:  5'- cCUGCuGGCGcugcUCGUGG-CGCgCAGCGc- -3'
miRNA:   3'- aGAUG-CCGC----AGUACCuGCG-GUCGCac -5'
29555 3' -56.6 NC_006151.1 + 96687 0.66 0.883539
Target:  5'- --gGCGGCGUCGaGGaaugcguccGCGCCGGgGg- -3'
miRNA:   3'- agaUGCCGCAGUaCC---------UGCGGUCgCac -5'
29555 3' -56.6 NC_006151.1 + 54755 0.66 0.883539
Target:  5'- --cGCGGCGUCAccaucaUGGACuaCGaccGCGUGc -3'
miRNA:   3'- agaUGCCGCAGU------ACCUGcgGU---CGCAC- -5'
29555 3' -56.6 NC_006151.1 + 103953 0.66 0.876472
Target:  5'- --gAUGGCGcUCGcGGcGCGCCAGCGc- -3'
miRNA:   3'- agaUGCCGC-AGUaCC-UGCGGUCGCac -5'
29555 3' -56.6 NC_006151.1 + 56295 0.66 0.869189
Target:  5'- --cGCGGCGgaggcGGACGCCGcGCGg- -3'
miRNA:   3'- agaUGCCGCagua-CCUGCGGU-CGCac -5'
29555 3' -56.6 NC_006151.1 + 21061 0.66 0.861693
Target:  5'- --cGCGGgGUCA-GGGCGgCCAGgGUc -3'
miRNA:   3'- agaUGCCgCAGUaCCUGC-GGUCgCAc -5'
29555 3' -56.6 NC_006151.1 + 67768 0.66 0.861693
Target:  5'- -gUGCGGCGUCGcguugaGGGCGuCCA-CGUGc -3'
miRNA:   3'- agAUGCCGCAGUa-----CCUGC-GGUcGCAC- -5'
29555 3' -56.6 NC_006151.1 + 133154 0.66 0.861693
Target:  5'- cUCggcgGCGGCGcgggCGUGGGCcucgGCCAcGCGUc -3'
miRNA:   3'- -AGa---UGCCGCa---GUACCUG----CGGU-CGCAc -5'
29555 3' -56.6 NC_006151.1 + 20153 0.66 0.861693
Target:  5'- --gGCGGCG-CGUGGAcCGCCGGg--- -3'
miRNA:   3'- agaUGCCGCaGUACCU-GCGGUCgcac -5'
29555 3' -56.6 NC_006151.1 + 21587 0.66 0.861693
Target:  5'- --cGCGGgGUCgAUGG-CGUaCGGCGUGg -3'
miRNA:   3'- agaUGCCgCAG-UACCuGCG-GUCGCAC- -5'
29555 3' -56.6 NC_006151.1 + 74310 0.67 0.846088
Target:  5'- aCU-CGGCGUCGUGG-UGCgGGUGc- -3'
miRNA:   3'- aGAuGCCGCAGUACCuGCGgUCGCac -5'
29555 3' -56.6 NC_006151.1 + 68961 0.67 0.837172
Target:  5'- --cGCGGCGcacggacUCGcGGACGCCGGCc-- -3'
miRNA:   3'- agaUGCCGC-------AGUaCCUGCGGUCGcac -5'
29555 3' -56.6 NC_006151.1 + 129778 0.67 0.829709
Target:  5'- --gAgGGCGUCGcuccCGCCGGCGUGg -3'
miRNA:   3'- agaUgCCGCAGUaccuGCGGUCGCAC- -5'
29555 3' -56.6 NC_006151.1 + 136762 0.67 0.821247
Target:  5'- cUCgcccCGGC--CAUGGGCGCCGGCuacGUGg -3'
miRNA:   3'- -AGau--GCCGcaGUACCUGCGGUCG---CAC- -5'
29555 3' -56.6 NC_006151.1 + 125530 0.67 0.821247
Target:  5'- aUCUcGCGGUG-CGUGGaggugcGCGgCGGCGUGu -3'
miRNA:   3'- -AGA-UGCCGCaGUACC------UGCgGUCGCAC- -5'
29555 3' -56.6 NC_006151.1 + 121408 0.67 0.821247
Target:  5'- cCUGCGGCGcgggCggGGACGUC-GCGg- -3'
miRNA:   3'- aGAUGCCGCa---GuaCCUGCGGuCGCac -5'
29555 3' -56.6 NC_006151.1 + 71089 0.67 0.821247
Target:  5'- --cACGGCGcCGcGGGCGCgGGCGc- -3'
miRNA:   3'- agaUGCCGCaGUaCCUGCGgUCGCac -5'
29555 3' -56.6 NC_006151.1 + 4613 0.67 0.812614
Target:  5'- -gUGgGGCG-CGUGGAC-CCGGCGcUGg -3'
miRNA:   3'- agAUgCCGCaGUACCUGcGGUCGC-AC- -5'
29555 3' -56.6 NC_006151.1 + 118889 0.68 0.803817
Target:  5'- --gGCGGCGaCGcGGcCGCCGGCGg- -3'
miRNA:   3'- agaUGCCGCaGUaCCuGCGGUCGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.