miRNA display CGI


Results 1 - 20 of 355 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29555 5' -63.4 NC_006151.1 + 137613 0.66 0.592496
Target:  5'- gGGCGCGggcggggaccccggcGCCUccgcccucguccGCGCCCCcguccCGGCGGa -3'
miRNA:   3'- -UCGCGC---------------CGGA------------CGCGGGGaa---GCUGCCg -5'
29555 5' -63.4 NC_006151.1 + 119964 0.66 0.588609
Target:  5'- gGGCGCG--CUGUGCCCgg-CGACGaGCu -3'
miRNA:   3'- -UCGCGCcgGACGCGGGgaaGCUGC-CG- -5'
29555 5' -63.4 NC_006151.1 + 114901 0.66 0.588609
Target:  5'- gGGCGCgaGGCCcggGCgcacgGCCCCggcgUCGcgcuCGGCc -3'
miRNA:   3'- -UCGCG--CCGGa--CG-----CGGGGa---AGCu---GCCG- -5'
29555 5' -63.4 NC_006151.1 + 40570 0.66 0.588609
Target:  5'- cGGCgGCGGCCgcgGCGgagggcUCGGCGGCg -3'
miRNA:   3'- -UCG-CGCCGGa--CGCgggga-AGCUGCCG- -5'
29555 5' -63.4 NC_006151.1 + 135366 0.66 0.588609
Target:  5'- cGCGCguuGGCCgcgUGCGCCgCgaCcACGGCg -3'
miRNA:   3'- uCGCG---CCGG---ACGCGGgGaaGcUGCCG- -5'
29555 5' -63.4 NC_006151.1 + 135164 0.66 0.588609
Target:  5'- gGGCGCGGCCcggacggGCGCCggcugCCgcCGcCGGg -3'
miRNA:   3'- -UCGCGCCGGa------CGCGG-----GGaaGCuGCCg -5'
29555 5' -63.4 NC_006151.1 + 117510 0.66 0.588609
Target:  5'- aAGCGCggacucacgGGCCgcucggGgGCCCCcUCccacGCGGCg -3'
miRNA:   3'- -UCGCG---------CCGGa-----CgCGGGGaAGc---UGCCG- -5'
29555 5' -63.4 NC_006151.1 + 99090 0.66 0.588609
Target:  5'- uGGCGCGgcGCCUGCGCacggaCCagggCGugcUGGCg -3'
miRNA:   3'- -UCGCGC--CGGACGCGg----GGaa--GCu--GCCG- -5'
29555 5' -63.4 NC_006151.1 + 66794 0.66 0.588609
Target:  5'- cGGCgGCGGCg-GgGCCCggggacgaCGACGGCg -3'
miRNA:   3'- -UCG-CGCCGgaCgCGGGgaa-----GCUGCCG- -5'
29555 5' -63.4 NC_006151.1 + 5084 0.66 0.588609
Target:  5'- cGCGgGGCCgcggcggGCGCCggcggagaCggUGGCGGCc -3'
miRNA:   3'- uCGCgCCGGa------CGCGGg-------GaaGCUGCCG- -5'
29555 5' -63.4 NC_006151.1 + 120756 0.66 0.587638
Target:  5'- cGCGUcauGGCCUgggugcgGCGCCCgCUggCGgacGCGGCc -3'
miRNA:   3'- uCGCG---CCGGA-------CGCGGG-GAa-GC---UGCCG- -5'
29555 5' -63.4 NC_006151.1 + 117261 0.66 0.578913
Target:  5'- aGGCGCgGGCCgcgcGCgGCCgCCgcCGACaGCg -3'
miRNA:   3'- -UCGCG-CCGGa---CG-CGG-GGaaGCUGcCG- -5'
29555 5' -63.4 NC_006151.1 + 67504 0.66 0.578913
Target:  5'- cGCGCGGCUcGCGUCCgggUCcAgGGCc -3'
miRNA:   3'- uCGCGCCGGaCGCGGGga-AGcUgCCG- -5'
29555 5' -63.4 NC_006151.1 + 64008 0.66 0.578913
Target:  5'- cGGUGCGGCgCcagGCGCCCgaUCG-CGucGCg -3'
miRNA:   3'- -UCGCGCCG-Ga--CGCGGGgaAGCuGC--CG- -5'
29555 5' -63.4 NC_006151.1 + 58806 0.66 0.578913
Target:  5'- aAGCGCGccgcguacgcGCCg--GCCCCgUCG-CGGCa -3'
miRNA:   3'- -UCGCGC----------CGGacgCGGGGaAGCuGCCG- -5'
29555 5' -63.4 NC_006151.1 + 20732 0.66 0.578913
Target:  5'- gGGCGCGagacgaacagcaGCCggcGCGCCUCcaccgCGGCGGa -3'
miRNA:   3'- -UCGCGC------------CGGa--CGCGGGGaa---GCUGCCg -5'
29555 5' -63.4 NC_006151.1 + 110986 0.66 0.578913
Target:  5'- uGCGCcucGGCCgcauccaucUGCaGCCCCgUCGcGCGGUu -3'
miRNA:   3'- uCGCG---CCGG---------ACG-CGGGGaAGC-UGCCG- -5'
29555 5' -63.4 NC_006151.1 + 91553 0.66 0.578913
Target:  5'- uGCGCGGCCaGCGggg---CGAUGGCg -3'
miRNA:   3'- uCGCGCCGGaCGCggggaaGCUGCCG- -5'
29555 5' -63.4 NC_006151.1 + 31202 0.66 0.578913
Target:  5'- cAGUGUGGCCcGCGuccaggccgggcCCCCggcCGGcCGGCc -3'
miRNA:   3'- -UCGCGCCGGaCGC------------GGGGaa-GCU-GCCG- -5'
29555 5' -63.4 NC_006151.1 + 137331 0.66 0.578913
Target:  5'- cGCGCucGCgCUGCucuuCCCCgaggcCGACGGCg -3'
miRNA:   3'- uCGCGc-CG-GACGc---GGGGaa---GCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.