miRNA display CGI


Results 41 - 58 of 58 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 5' -56.8 NC_006151.1 + 81980 0.66 0.874039
Target:  5'- uACGGCC--CGGGcugcaccacgGCGGCCAGG-GCg -3'
miRNA:   3'- -UGCCGGaaGCUCa---------UGCUGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 104530 0.66 0.881189
Target:  5'- cGCGGCUUcccCGAGUACGagGCC--GAGCUg -3'
miRNA:   3'- -UGCCGGAa--GCUCAUGC--UGGucCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 122692 0.66 0.846548
Target:  5'- gGCGGCCguggagcucgcgcucUUCGGGcgGCGGCCc-GAGCa -3'
miRNA:   3'- -UGCCGG---------------AAGCUCa-UGCUGGucCUCGa -5'
29556 5' -56.8 NC_006151.1 + 89599 0.67 0.83516
Target:  5'- gGCGGCCgu-GAGgacgAUGGCCgcgaggaugAGGAGCg -3'
miRNA:   3'- -UGCCGGaagCUCa---UGCUGG---------UCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 123123 0.67 0.83516
Target:  5'- gGCGaGCCUggCGcAGUGCGugCGcGAGCa -3'
miRNA:   3'- -UGC-CGGAa-GC-UCAUGCugGUcCUCGa -5'
29556 5' -56.8 NC_006151.1 + 4208 0.68 0.773229
Target:  5'- -gGGCC--CGAGgGCGGCCGGGGcGCg -3'
miRNA:   3'- ugCCGGaaGCUCaUGCUGGUCCU-CGa -5'
29556 5' -56.8 NC_006151.1 + 18555 0.68 0.773229
Target:  5'- aACGGCCg-CGAGgccgcccgGCGG-CGGGAGCa -3'
miRNA:   3'- -UGCCGGaaGCUCa-------UGCUgGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 141988 0.68 0.773229
Target:  5'- gGCGGCCcgggaaaaaGAGcGCGGCguGGGGCg -3'
miRNA:   3'- -UGCCGGaag------CUCaUGCUGguCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 19872 0.67 0.788951
Target:  5'- -gGGCCUcggUgGAGaGCGccagggccagcagcGCCAGGAGCUg -3'
miRNA:   3'- ugCCGGA---AgCUCaUGC--------------UGGUCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 71286 0.67 0.791684
Target:  5'- gACGGCC-UCGGG---GGCCGGcGAGCa -3'
miRNA:   3'- -UGCCGGaAGCUCaugCUGGUC-CUCGa -5'
29556 5' -56.8 NC_006151.1 + 39773 0.67 0.808686
Target:  5'- gGCGccGCCUUCGGGcaccgcGCGGCCaaccgcuGGGGGCUc -3'
miRNA:   3'- -UGC--CGGAAGCUCa-----UGCUGG-------UCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 105088 0.67 0.809565
Target:  5'- -aGGCCgUCGAGUGgcUGcACCAGGcGCg -3'
miRNA:   3'- ugCCGGaAGCUCAU--GC-UGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 136062 0.67 0.809565
Target:  5'- cCGGCaacgcCGAGUACGcGCC-GGAGCg -3'
miRNA:   3'- uGCCGgaa--GCUCAUGC-UGGuCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 82696 0.67 0.818269
Target:  5'- gGCGGCCcccgCGAG---GGCCAGGAGg- -3'
miRNA:   3'- -UGCCGGaa--GCUCaugCUGGUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 107272 0.67 0.825957
Target:  5'- cCGGCCaccUCGGaggagcuGUACGGCCGGccGAGCUu -3'
miRNA:   3'- uGCCGGa--AGCU-------CAUGCUGGUC--CUCGA- -5'
29556 5' -56.8 NC_006151.1 + 21392 0.67 0.826803
Target:  5'- gACGGCCggCGGG-GCGA--AGGGGCg -3'
miRNA:   3'- -UGCCGGaaGCUCaUGCUggUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 71623 0.67 0.826803
Target:  5'- cGCGGCCUUcucgcCGGGggggACGGuCgGGGGGCc -3'
miRNA:   3'- -UGCCGGAA-----GCUCa---UGCU-GgUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 118176 0.66 0.881189
Target:  5'- cGCGGCCUgaccgUCGAGgcCGGCUucgccGGGCa -3'
miRNA:   3'- -UGCCGGA-----AGCUCauGCUGGuc---CUCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.