miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29556 5' -56.8 NC_006151.1 + 105088 0.67 0.809565
Target:  5'- -aGGCCgUCGAGUGgcUGcACCAGGcGCg -3'
miRNA:   3'- ugCCGGaAGCUCAU--GC-UGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 136062 0.67 0.809565
Target:  5'- cCGGCaacgcCGAGUACGcGCC-GGAGCg -3'
miRNA:   3'- uGCCGgaa--GCUCAUGC-UGGuCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 39773 0.67 0.808686
Target:  5'- gGCGccGCCUUCGGGcaccgcGCGGCCaaccgcuGGGGGCUc -3'
miRNA:   3'- -UGC--CGGAAGCUCa-----UGCUGG-------UCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 71286 0.67 0.791684
Target:  5'- gACGGCC-UCGGG---GGCCGGcGAGCa -3'
miRNA:   3'- -UGCCGGaAGCUCaugCUGGUC-CUCGa -5'
29556 5' -56.8 NC_006151.1 + 19872 0.67 0.788951
Target:  5'- -gGGCCUcggUgGAGaGCGccagggccagcagcGCCAGGAGCUg -3'
miRNA:   3'- ugCCGGA---AgCUCaUGC--------------UGGUCCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 141988 0.68 0.773229
Target:  5'- gGCGGCCcgggaaaaaGAGcGCGGCguGGGGCg -3'
miRNA:   3'- -UGCCGGaag------CUCaUGCUGguCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 18555 0.68 0.773229
Target:  5'- aACGGCCg-CGAGgccgcccgGCGG-CGGGAGCa -3'
miRNA:   3'- -UGCCGGaaGCUCa-------UGCUgGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 4208 0.68 0.773229
Target:  5'- -gGGCC--CGAGgGCGGCCGGGGcGCg -3'
miRNA:   3'- ugCCGGaaGCUCaUGCUGGUCCU-CGa -5'
29556 5' -56.8 NC_006151.1 + 14644 0.68 0.770415
Target:  5'- gGCGGCCgggcUCGGGUccgguuccgggucgGCGuCgGGGAGCc -3'
miRNA:   3'- -UGCCGGa---AGCUCA--------------UGCuGgUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 124164 0.68 0.763807
Target:  5'- -aGGCCUgcccCGAGUACu-CgCAGGGGCg -3'
miRNA:   3'- ugCCGGAa---GCUCAUGcuG-GUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 57450 0.68 0.763807
Target:  5'- gGCGGCCccCGcGU-CGGCCAGGuGCc -3'
miRNA:   3'- -UGCCGGaaGCuCAuGCUGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 123755 0.68 0.763807
Target:  5'- gGCGGUCUUUG-GcGCGGgccCCGGGGGCa -3'
miRNA:   3'- -UGCCGGAAGCuCaUGCU---GGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 648 0.68 0.754269
Target:  5'- cCGGCUUcCGGGgcGCGGCCGGG-GCg -3'
miRNA:   3'- uGCCGGAaGCUCa-UGCUGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 33136 0.68 0.754269
Target:  5'- -gGGCCgagugucgggCGAGUGCGAggcgggUCGGGGGCg -3'
miRNA:   3'- ugCCGGaa--------GCUCAUGCU------GGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 5891 0.69 0.734879
Target:  5'- cCGGCCUcugccgcugCGAGUGCuGCCGGGgucGGCg -3'
miRNA:   3'- uGCCGGAa--------GCUCAUGcUGGUCC---UCGa -5'
29556 5' -56.8 NC_006151.1 + 104139 0.69 0.734879
Target:  5'- gGCGGCCgaccgCGGcUACGacGCCGcGGAGCUg -3'
miRNA:   3'- -UGCCGGaa---GCUcAUGC--UGGU-CCUCGA- -5'
29556 5' -56.8 NC_006151.1 + 133382 0.69 0.734879
Target:  5'- gGCGGCCg--GGGcgGCGGCCGGG-GCc -3'
miRNA:   3'- -UGCCGGaagCUCa-UGCUGGUCCuCGa -5'
29556 5' -56.8 NC_006151.1 + 138604 0.69 0.734879
Target:  5'- cGCGGCgCUgccgcucggCGAGgACGccGCCGGGGGCg -3'
miRNA:   3'- -UGCCG-GAa--------GCUCaUGC--UGGUCCUCGa -5'
29556 5' -56.8 NC_006151.1 + 10019 0.69 0.725046
Target:  5'- gGCGGCggUCGcc-GCGGCCAGGAGg- -3'
miRNA:   3'- -UGCCGgaAGCucaUGCUGGUCCUCga -5'
29556 5' -56.8 NC_006151.1 + 84336 0.69 0.725046
Target:  5'- cGCGGCCUcgcCGAGUACGucGCCGGcccgcGGCg -3'
miRNA:   3'- -UGCCGGAa--GCUCAUGC--UGGUCc----UCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.