miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 3' -56.8 NC_006151.1 + 117740 0.66 0.835253
Target:  5'- cGCUCGUcccacGCGgagGUGCgaAGCGCCGgccgagguauaggcUCCGGg -3'
miRNA:   3'- -UGAGCG-----CGCa--CAUG--UCGCGGU--------------AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 50469 0.67 0.829406
Target:  5'- cGCUCGCGCcaGcGCGGCGCgAccgagCCGGa -3'
miRNA:   3'- -UGAGCGCGcaCaUGUCGCGgUa----GGUC- -5'
29557 3' -56.8 NC_006151.1 + 130340 0.67 0.820902
Target:  5'- aGCUCGCGCGcc-GCGGCGUCGUg--- -3'
miRNA:   3'- -UGAGCGCGCacaUGUCGCGGUAgguc -5'
29557 3' -56.8 NC_006151.1 + 49244 0.67 0.820902
Target:  5'- cGCUCggcuggGCGCGgcucGUGC-GCGCCgucGUCCAGc -3'
miRNA:   3'- -UGAG------CGCGCa---CAUGuCGCGG---UAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 104017 0.67 0.812225
Target:  5'- cGC-CGCGCGgcggagGUggagcgcgcGCAGCGCCAgcUCUGGg -3'
miRNA:   3'- -UGaGCGCGCa-----CA---------UGUCGCGGU--AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 5125 0.67 0.812225
Target:  5'- gGCgCGgGCGaGUGgGGCGCCGggCCGGa -3'
miRNA:   3'- -UGaGCgCGCaCAUgUCGCGGUa-GGUC- -5'
29557 3' -56.8 NC_006151.1 + 132136 0.67 0.812225
Target:  5'- aGCUCGCGCcggcgGUGguugACGGCGCgCAgcugcgcggCCGGc -3'
miRNA:   3'- -UGAGCGCG-----CACa---UGUCGCG-GUa--------GGUC- -5'
29557 3' -56.8 NC_006151.1 + 99912 0.67 0.803383
Target:  5'- gACgugggCGCGCGacUACGGCGCCggCCu- -3'
miRNA:   3'- -UGa----GCGCGCacAUGUCGCGGuaGGuc -5'
29557 3' -56.8 NC_006151.1 + 97289 0.67 0.803383
Target:  5'- gGCggCGgGCGUGUugAGCcgGCCcgUCGGg -3'
miRNA:   3'- -UGa-GCgCGCACAugUCG--CGGuaGGUC- -5'
29557 3' -56.8 NC_006151.1 + 72091 0.67 0.8007
Target:  5'- aGCUCGCGgGccUGggcgagcgGCAGCGUCAuggggaagcgcagcUCCAGg -3'
miRNA:   3'- -UGAGCGCgC--ACa-------UGUCGCGGU--------------AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 107097 0.67 0.785241
Target:  5'- -gUCGCGCGUGcucugGGCGCCGcCCGa -3'
miRNA:   3'- ugAGCGCGCACaug--UCGCGGUaGGUc -5'
29557 3' -56.8 NC_006151.1 + 82354 0.67 0.785241
Target:  5'- cGC-CGUG-GUGUACGuGCGCCGgacgCCGGg -3'
miRNA:   3'- -UGaGCGCgCACAUGU-CGCGGUa---GGUC- -5'
29557 3' -56.8 NC_006151.1 + 18690 0.67 0.78247
Target:  5'- cACgggCGCGCGg--GCGGCGCCggcgucgugacgccGUCCAc -3'
miRNA:   3'- -UGa--GCGCGCacaUGUCGCGG--------------UAGGUc -5'
29557 3' -56.8 NC_006151.1 + 17405 0.68 0.775958
Target:  5'- cGCguggCGCGCGgcaGCAGgGCCAgcgagCCGGg -3'
miRNA:   3'- -UGa---GCGCGCacaUGUCgCGGUa----GGUC- -5'
29557 3' -56.8 NC_006151.1 + 72380 0.68 0.775958
Target:  5'- cGCgcagCGuCGCGUGccgccGCAGCGUC-UCCAGa -3'
miRNA:   3'- -UGa---GC-GCGCACa----UGUCGCGGuAGGUC- -5'
29557 3' -56.8 NC_006151.1 + 68259 0.68 0.766546
Target:  5'- gACgCGCGCGgcgacgGUcGCGGCGCCGggcgCCAc -3'
miRNA:   3'- -UGaGCGCGCa-----CA-UGUCGCGGUa---GGUc -5'
29557 3' -56.8 NC_006151.1 + 122393 0.68 0.766546
Target:  5'- cGCgggCGCGCGcugGCGGCGCUcgCCGc -3'
miRNA:   3'- -UGa--GCGCGCacaUGUCGCGGuaGGUc -5'
29557 3' -56.8 NC_006151.1 + 117621 0.68 0.762747
Target:  5'- gGCUCGCGCGcgagcgugcccacGUGCAcgccGCGCUGcUCCGGg -3'
miRNA:   3'- -UGAGCGCGCa------------CAUGU----CGCGGU-AGGUC- -5'
29557 3' -56.8 NC_006151.1 + 136937 0.68 0.757014
Target:  5'- aGC-CGgGCGccgACGGCGCCGUCCu- -3'
miRNA:   3'- -UGaGCgCGCacaUGUCGCGGUAGGuc -5'
29557 3' -56.8 NC_006151.1 + 17339 0.68 0.747371
Target:  5'- aGCUCGUGCGUcucgguggugauGUagaACGGCGCCGUggggUCGGa -3'
miRNA:   3'- -UGAGCGCGCA------------CA---UGUCGCGGUA----GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.