miRNA display CGI


Results 61 - 80 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 58983 0.74 0.140182
Target:  5'- cUCCGCGggcacgagcgagagcGCGGCGuCCaGCGGCGCGuCGAa -3'
miRNA:   3'- aAGGCGC---------------CGCUGC-GG-CGCCGCGC-GCU- -5'
29557 5' -65.9 NC_006151.1 + 53942 0.74 0.141894
Target:  5'- -gCCGCGGCGAgggacuugaaccaCGCCaGCGGCG-GCGGc -3'
miRNA:   3'- aaGGCGCCGCU-------------GCGG-CGCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 57231 0.74 0.145725
Target:  5'- -gUCGCaGGCGGCGCgCGCGGCcucggcguccGCGCGGc -3'
miRNA:   3'- aaGGCG-CCGCUGCG-GCGCCG----------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 102381 0.74 0.138827
Target:  5'- -cCCGUGGCcaagcuGGCGCugguCGCGGCGCGCGu -3'
miRNA:   3'- aaGGCGCCG------CUGCG----GCGCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 104805 0.74 0.142238
Target:  5'- gUgCGCcGCGACcugGCgGCGGCGCGCGAc -3'
miRNA:   3'- aAgGCGcCGCUG---CGgCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 86724 0.74 0.149291
Target:  5'- -gUCGCGGCG-CGCCGCcgcgaggccGGCGUGCGc -3'
miRNA:   3'- aaGGCGCCGCuGCGGCG---------CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 11697 0.73 0.15666
Target:  5'- -gCCGCGGgaCGGCGCgUGCGGCGCG-GAa -3'
miRNA:   3'- aaGGCGCC--GCUGCG-GCGCCGCGCgCU- -5'
29557 5' -65.9 NC_006151.1 + 139275 0.73 0.163964
Target:  5'- cUCCGaCGGCGgacGCGCCgcccucggcgucuGCGGCGCGUGc -3'
miRNA:   3'- aAGGC-GCCGC---UGCGG-------------CGCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 57514 0.73 0.172392
Target:  5'- -gCCGCGGCGGCggcgGCCGCcuccGGCGCggccGCGGg -3'
miRNA:   3'- aaGGCGCCGCUG----CGGCG----CCGCG----CGCU- -5'
29557 5' -65.9 NC_006151.1 + 10467 0.73 0.151833
Target:  5'- --aCGCGGCGGCggugaaggaggagaGCCGCccGGCGCGCGc -3'
miRNA:   3'- aagGCGCCGCUG--------------CGGCG--CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 89716 0.73 0.172392
Target:  5'- -cCCgGCGGCGcCgGCCGCGGC-CGCGGu -3'
miRNA:   3'- aaGG-CGCCGCuG-CGGCGCCGcGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 112604 0.73 0.15666
Target:  5'- -gCCGCcGCGGCGCCGCuGGCGCuggaCGAg -3'
miRNA:   3'- aaGGCGcCGCUGCGGCG-CCGCGc---GCU- -5'
29557 5' -65.9 NC_006151.1 + 37399 0.73 0.152935
Target:  5'- gUCCGCuacGGCGGCGCCGgGGacuccCGCGAg -3'
miRNA:   3'- aAGGCG---CCGCUGCGGCgCCgc---GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 103481 0.73 0.172392
Target:  5'- -cUCGCGGCGcugugGCGCCugGUGGCGCGCu- -3'
miRNA:   3'- aaGGCGCCGC-----UGCGG--CGCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 85893 0.73 0.160467
Target:  5'- -aUCGCGGCgcacGACGCCGUGGcCGUGCa- -3'
miRNA:   3'- aaGGCGCCG----CUGCGGCGCC-GCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 84632 0.73 0.159316
Target:  5'- -gCCGCGGCG-CuggacaacgccaugGCCGCgGGCGCGCGc -3'
miRNA:   3'- aaGGCGCCGCuG--------------CGGCG-CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 64893 0.73 0.172392
Target:  5'- -gCCGCGaagaGC-ACGCaGCGGCGCGCGAg -3'
miRNA:   3'- aaGGCGC----CGcUGCGgCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 5338 0.73 0.152935
Target:  5'- -gCCGCGGCGgaggGCGCCcucuccggcGCGGCGCcgGCGGg -3'
miRNA:   3'- aaGGCGCCGC----UGCGG---------CGCCGCG--CGCU- -5'
29557 5' -65.9 NC_006151.1 + 3090 0.73 0.154415
Target:  5'- ---gGCGGCGAgcagcgccgagaggcCGCCGCGGCGCGgGu -3'
miRNA:   3'- aaggCGCCGCU---------------GCGGCGCCGCGCgCu -5'
29557 5' -65.9 NC_006151.1 + 104589 0.73 0.164357
Target:  5'- -gCUGCaggccGGCGGCaGCCGCGGCGC-CGAg -3'
miRNA:   3'- aaGGCG-----CCGCUG-CGGCGCCGCGcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.