Results 61 - 80 of 499 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 81501 | 0.66 | 0.477141 |
Target: 5'- -gCCGuCGGCGAgaG-CGCGGCccGCGUGAg -3' miRNA: 3'- aaGGC-GCCGCUg-CgGCGCCG--CGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 101291 | 0.66 | 0.458667 |
Target: 5'- --gCGCgGGCGGCGCCGCGcugcacuGCGUcuucucGCGGg -3' miRNA: 3'- aagGCG-CCGCUGCGGCGC-------CGCG------CGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 50676 | 0.66 | 0.450868 |
Target: 5'- -gCCGCacccccGCGcCGCCGCGGCaGCGUc- -3' miRNA: 3'- aaGGCGc-----CGCuGCGGCGCCG-CGCGcu -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 53789 | 0.66 | 0.450868 |
Target: 5'- gUUCUggGCGGCGACGCgCGuCGaGCcCGUGAu -3' miRNA: 3'- -AAGG--CGCCGCUGCG-GC-GC-CGcGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 69448 | 0.66 | 0.450868 |
Target: 5'- gUUCGCGuccucGCG-CGCCGCGG-GCGCc- -3' miRNA: 3'- aAGGCGC-----CGCuGCGGCGCCgCGCGcu -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 138708 | 0.66 | 0.450868 |
Target: 5'- -gCC-CGGCGcUGCgCGCcGCGCGCGGg -3' miRNA: 3'- aaGGcGCCGCuGCG-GCGcCGCGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 21472 | 0.66 | 0.450868 |
Target: 5'- -cCCGCgucgccggcucgGGCaGGCgGCCGgGGgGCGCGGg -3' miRNA: 3'- aaGGCG------------CCG-CUG-CGGCgCCgCGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 53249 | 0.66 | 0.450868 |
Target: 5'- gUUCuCGCuGGCG-CGCaCGCGGCacagcugccGCGCGu -3' miRNA: 3'- -AAG-GCG-CCGCuGCG-GCGCCG---------CGCGCu -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 103197 | 0.66 | 0.454325 |
Target: 5'- -cCCugGCGGCcgccccggacgaggaGACG-CGCGuGCGCGCGAu -3' miRNA: 3'- aaGG--CGCCG---------------CUGCgGCGC-CGCGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 62020 | 0.66 | 0.456928 |
Target: 5'- -gCCGCccuGGCGgccagccccccgcuGCGCCGCGuggcggugcacGCGCGCGc -3' miRNA: 3'- aaGGCG---CCGC--------------UGCGGCGC-----------CGCGCGCu -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 96790 | 0.66 | 0.458667 |
Target: 5'- ---aGCGGagaguccCGA-GCCGgGGCGCGCGGg -3' miRNA: 3'- aaggCGCC-------GCUgCGGCgCCGCGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 113646 | 0.66 | 0.477141 |
Target: 5'- --gCGCGGCGACG-CGCuGCGCaagGCGc -3' miRNA: 3'- aagGCGCCGCUGCgGCGcCGCG---CGCu -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 131966 | 0.66 | 0.458667 |
Target: 5'- ---gGCGGCaguacguGugGUCGCGGUacucGCGCGAg -3' miRNA: 3'- aaggCGCCG-------CugCGGCGCCG----CGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 90768 | 0.66 | 0.459538 |
Target: 5'- -aCgGUGGCGGgGUCgGCgGGCGCGCa- -3' miRNA: 3'- aaGgCGCCGCUgCGG-CG-CCGCGCGcu -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 103297 | 0.66 | 0.459538 |
Target: 5'- --gCGCGcGCGGCuCgCGCGGCGCGaCGc -3' miRNA: 3'- aagGCGC-CGCUGcG-GCGCCGCGC-GCu -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 96861 | 0.66 | 0.459538 |
Target: 5'- -aCCGCGcccGCcgGGCGCgGC-GCGCGCGGg -3' miRNA: 3'- aaGGCGC---CG--CUGCGgCGcCGCGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 96006 | 0.66 | 0.459538 |
Target: 5'- gUCCGUgauGGCGcgcacCGCCuccucgGUGGUGCGCGGc -3' miRNA: 3'- aAGGCG---CCGCu----GCGG------CGCCGCGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 121638 | 0.66 | 0.459538 |
Target: 5'- -cCCGUGGCcucucuCGCgGCGGaCGgGCGGg -3' miRNA: 3'- aaGGCGCCGcu----GCGgCGCC-GCgCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 70999 | 0.66 | 0.46041 |
Target: 5'- -gCCGUGGCcaucgugggcgccauGCGCCGCGaGCuCGCGGa -3' miRNA: 3'- aaGGCGCCGc--------------UGCGGCGC-CGcGCGCU- -5' |
|||||||
29557 | 5' | -65.9 | NC_006151.1 | + | 82402 | 0.66 | 0.467417 |
Target: 5'- cUCCGCgcccgagGGCGGCcCCGagaGGCGCGgGc -3' miRNA: 3'- aAGGCG-------CCGCUGcGGCg--CCGCGCgCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home