miRNA display CGI


Results 21 - 40 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29558 3' -55.8 NC_006151.1 + 6174 0.66 0.908543
Target:  5'- gGCGGCgUCGUCggagaagaGGCCGCc-CG-GGCCg -3'
miRNA:   3'- -UGCUGaAGUAG--------UCGGCGcuGCuCCGG- -5'
29558 3' -55.8 NC_006151.1 + 35374 0.66 0.908543
Target:  5'- gGCGAgagaaauccCAUUGGCCGuCGAUGGGGCa -3'
miRNA:   3'- -UGCUgaa------GUAGUCGGC-GCUGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 61649 0.66 0.908543
Target:  5'- gGCGugUggacgCGcCAGCCGCu-CGuGGCCc -3'
miRNA:   3'- -UGCugAa----GUaGUCGGCGcuGCuCCGG- -5'
29558 3' -55.8 NC_006151.1 + 88187 0.66 0.908543
Target:  5'- -aGACggUGUCGGCgGCGuggucggaccagGCGAGGCg -3'
miRNA:   3'- ugCUGaaGUAGUCGgCGC------------UGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 90671 0.66 0.908543
Target:  5'- gGCGGCgggccgcUUGUCccCCGCGGCGGGGgCg -3'
miRNA:   3'- -UGCUGa------AGUAGucGGCGCUGCUCCgG- -5'
29558 3' -55.8 NC_006151.1 + 28114 0.66 0.908543
Target:  5'- cGCGGCUccUCGUCGGCuCGgGGCGc-GCUc -3'
miRNA:   3'- -UGCUGA--AGUAGUCG-GCgCUGCucCGG- -5'
29558 3' -55.8 NC_006151.1 + 45289 0.66 0.908543
Target:  5'- aGCGGCggUCGUCccgaGGaCC-CG-CGAGGCCg -3'
miRNA:   3'- -UGCUGa-AGUAG----UC-GGcGCuGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 65148 0.66 0.908543
Target:  5'- aGCGACgugaUCuUCAGCgccuugcggCGCG-CGAGGCg -3'
miRNA:   3'- -UGCUGa---AGuAGUCG---------GCGCuGCUCCGg -5'
29558 3' -55.8 NC_006151.1 + 123230 0.66 0.908543
Target:  5'- cCGGgUUCcgcgcaCGGCgCGCGuucuGCGAGGCCg -3'
miRNA:   3'- uGCUgAAGua----GUCG-GCGC----UGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 87470 0.66 0.907934
Target:  5'- cCGGCUccagCAgcggCAGCCGCcGCGgccgcccccguucAGGCCg -3'
miRNA:   3'- uGCUGAa---GUa---GUCGGCGcUGC-------------UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 78792 0.66 0.902345
Target:  5'- gGCGACUcgcCcgCGGCCcucCG-CGGGGCCc -3'
miRNA:   3'- -UGCUGAa--GuaGUCGGc--GCuGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 76848 0.66 0.902345
Target:  5'- gGCGACguaCAggaaggcCAGCCGCGcCGccGCCa -3'
miRNA:   3'- -UGCUGaa-GUa------GUCGGCGCuGCucCGG- -5'
29558 3' -55.8 NC_006151.1 + 6066 0.66 0.902345
Target:  5'- cACGAUcUCGcCcgAGCCcCGGCGGGGCUg -3'
miRNA:   3'- -UGCUGaAGUaG--UCGGcGCUGCUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 116855 0.66 0.902345
Target:  5'- gGCGGCggggaaGGCCGCGuCGucGCCg -3'
miRNA:   3'- -UGCUGaaguagUCGGCGCuGCucCGG- -5'
29558 3' -55.8 NC_006151.1 + 95031 0.66 0.902345
Target:  5'- aGCGGCUgugCucgaAGCCGUcgaaggGGCGcAGGCCg -3'
miRNA:   3'- -UGCUGAa--Guag-UCGGCG------CUGC-UCCGG- -5'
29558 3' -55.8 NC_006151.1 + 100273 0.66 0.902345
Target:  5'- uGCcGCUUCGUCuuCCGCGgGCGcacGGCCu -3'
miRNA:   3'- -UGcUGAAGUAGucGGCGC-UGCu--CCGG- -5'
29558 3' -55.8 NC_006151.1 + 121396 0.66 0.902345
Target:  5'- uCGACUUUGg-GGCCuGCGGCGcGGGCg -3'
miRNA:   3'- uGCUGAAGUagUCGG-CGCUGC-UCCGg -5'
29558 3' -55.8 NC_006151.1 + 119103 0.66 0.902345
Target:  5'- uCGGCgcguaCGUgAGCCGCG-CGGccGGCCu -3'
miRNA:   3'- uGCUGaa---GUAgUCGGCGCuGCU--CCGG- -5'
29558 3' -55.8 NC_006151.1 + 37464 0.66 0.902345
Target:  5'- cGCGGCccgCuacCGcGCCGCGGCcGGGCCc -3'
miRNA:   3'- -UGCUGaa-Gua-GU-CGGCGCUGcUCCGG- -5'
29558 3' -55.8 NC_006151.1 + 116454 0.66 0.902345
Target:  5'- gGCGACggCGUaCAuGUCcagggaGACGAGGCCg -3'
miRNA:   3'- -UGCUGaaGUA-GU-CGGcg----CUGCUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.