miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29560 5' -53.6 NC_006151.1 + 65451 0.66 0.947807
Target:  5'- ---aUGAGCuGGCGCAGCggcGCCGAg--- -3'
miRNA:   3'- aaaaGCUCG-CCGCGUCG---UGGUUgaug -5'
29560 5' -53.6 NC_006151.1 + 37995 0.66 0.947807
Target:  5'- ------cGCGGCGUccucgAGCGCCuGCUGCc -3'
miRNA:   3'- aaaagcuCGCCGCG-----UCGUGGuUGAUG- -5'
29560 5' -53.6 NC_006151.1 + 51403 0.66 0.947807
Target:  5'- ---gCGAGCGcGuCGCAGCGCguGCa-- -3'
miRNA:   3'- aaaaGCUCGC-C-GCGUCGUGguUGaug -5'
29560 5' -53.6 NC_006151.1 + 136939 0.66 0.947807
Target:  5'- ---cCGGGCGcCGaCGGCGCCGucCUGCg -3'
miRNA:   3'- aaaaGCUCGCcGC-GUCGUGGUu-GAUG- -5'
29560 5' -53.6 NC_006151.1 + 64301 0.66 0.947807
Target:  5'- --gUCGGGCGuGcCGCAGCgcGCCGuGCUGg -3'
miRNA:   3'- aaaAGCUCGC-C-GCGUCG--UGGU-UGAUg -5'
29560 5' -53.6 NC_006151.1 + 67803 0.66 0.947807
Target:  5'- ------cGCGGCacucGCGGCAgCAGCUGCc -3'
miRNA:   3'- aaaagcuCGCCG----CGUCGUgGUUGAUG- -5'
29560 5' -53.6 NC_006151.1 + 105519 0.66 0.946907
Target:  5'- --cUCGAccgcaugGCGGCGC-GCAUCGggcccgaGCUGCg -3'
miRNA:   3'- aaaAGCU-------CGCCGCGuCGUGGU-------UGAUG- -5'
29560 5' -53.6 NC_006151.1 + 57047 0.66 0.943209
Target:  5'- ---gCGGGgGGCGCAGCugCucguaggGCa -3'
miRNA:   3'- aaaaGCUCgCCGCGUCGugGuuga---UG- -5'
29560 5' -53.6 NC_006151.1 + 64609 0.66 0.943209
Target:  5'- ---aCGccAGCGGCGCcGCGCCGccgGCcGCg -3'
miRNA:   3'- aaaaGC--UCGCCGCGuCGUGGU---UGaUG- -5'
29560 5' -53.6 NC_006151.1 + 86384 0.66 0.943209
Target:  5'- ----gGAGCGGCuGCuGUACCuGCUGa -3'
miRNA:   3'- aaaagCUCGCCG-CGuCGUGGuUGAUg -5'
29560 5' -53.6 NC_006151.1 + 104904 0.66 0.943209
Target:  5'- --gUgGAcGCGGCgGCGGCGCgCGACcGCg -3'
miRNA:   3'- aaaAgCU-CGCCG-CGUCGUG-GUUGaUG- -5'
29560 5' -53.6 NC_006151.1 + 118793 0.66 0.943209
Target:  5'- ---gCGcGCGGCGCGGCGCac-CUGg -3'
miRNA:   3'- aaaaGCuCGCCGCGUCGUGguuGAUg -5'
29560 5' -53.6 NC_006151.1 + 84015 0.66 0.943209
Target:  5'- --cUCGGG-GuGCGCcGCcCCGACUGCg -3'
miRNA:   3'- aaaAGCUCgC-CGCGuCGuGGUUGAUG- -5'
29560 5' -53.6 NC_006151.1 + 134218 0.66 0.943209
Target:  5'- ----gGGGCGGuCGCAcCACCAACg-- -3'
miRNA:   3'- aaaagCUCGCC-GCGUcGUGGUUGaug -5'
29560 5' -53.6 NC_006151.1 + 54906 0.66 0.938356
Target:  5'- --cUCGc-CGGCGCAGCGCguGCacgGCg -3'
miRNA:   3'- aaaAGCucGCCGCGUCGUGguUGa--UG- -5'
29560 5' -53.6 NC_006151.1 + 71815 0.66 0.938356
Target:  5'- --cUCGcgcGUGGCGCuGC-CCAGCUGg -3'
miRNA:   3'- aaaAGCu--CGCCGCGuCGuGGUUGAUg -5'
29560 5' -53.6 NC_006151.1 + 104597 0.66 0.938356
Target:  5'- ---cCG-GCGGCagccGCGGCGCCGAgauCUGCc -3'
miRNA:   3'- aaaaGCuCGCCG----CGUCGUGGUU---GAUG- -5'
29560 5' -53.6 NC_006151.1 + 134615 0.66 0.933245
Target:  5'- --gUCGGGCcagcGCGUGGC-CCAGCUGg -3'
miRNA:   3'- aaaAGCUCGc---CGCGUCGuGGUUGAUg -5'
29560 5' -53.6 NC_006151.1 + 85627 0.66 0.933245
Target:  5'- ---cCGccGCcGCGCGGCGCCAGCggggACg -3'
miRNA:   3'- aaaaGCu-CGcCGCGUCGUGGUUGa---UG- -5'
29560 5' -53.6 NC_006151.1 + 63902 0.66 0.933245
Target:  5'- --cUCGAGCaGGCGCGcguacgcgcGCGCCGugggGCUcGCg -3'
miRNA:   3'- aaaAGCUCG-CCGCGU---------CGUGGU----UGA-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.