miRNA display CGI


Results 41 - 60 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 3' -49.6 NC_006151.1 + 83126 0.68 0.988776
Target:  5'- cGCaGAGCUcgGGcGCCUUGUaCGCG-CCa -3'
miRNA:   3'- -CG-CUCGGuuUC-UGGAACAaGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 87347 0.68 0.990927
Target:  5'- cCGGGCCuccAGGGCCUggcggcccccgucGcgCACGUCCc -3'
miRNA:   3'- cGCUCGGu--UUCUGGAa------------CaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 90051 0.73 0.871938
Target:  5'- gGCGAuGCCGAGGcgcGCCUcgGUgcgCACGUUCa -3'
miRNA:   3'- -CGCU-CGGUUUC---UGGAa-CAa--GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 91358 0.67 0.993531
Target:  5'- cGCc-GCCGGucGACCUUGagCGCGUCg -3'
miRNA:   3'- -CGcuCGGUUu-CUGGAACaaGUGCAGg -5'
29561 3' -49.6 NC_006151.1 + 93580 0.68 0.985552
Target:  5'- gGCGcGCCAAAGAgCggGcUCGCG-CCg -3'
miRNA:   3'- -CGCuCGGUUUCUgGaaCaAGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 94697 0.69 0.974431
Target:  5'- cGCG-GCCAcGGACCacUGcgCGCGcUCCa -3'
miRNA:   3'- -CGCuCGGUuUCUGGa-ACaaGUGC-AGG- -5'
29561 3' -49.6 NC_006151.1 + 95141 0.68 0.987242
Target:  5'- cGCGccGCCGGGucGGCCaUGUcCAUGUCCa -3'
miRNA:   3'- -CGCu-CGGUUU--CUGGaACAaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 96143 0.74 0.864205
Target:  5'- cGCGAaaguacgcGUCAAAGACCUcgGgccaCGCGUCCg -3'
miRNA:   3'- -CGCU--------CGGUUUCUGGAa-Caa--GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 96447 0.66 0.996515
Target:  5'- gGCGAGCCAGGcGuCCagGUccgccUCGCGgcUCCg -3'
miRNA:   3'- -CGCUCGGUUU-CuGGaaCA-----AGUGC--AGG- -5'
29561 3' -49.6 NC_006151.1 + 96534 0.68 0.991411
Target:  5'- cCGGGa-GAAGGCCUUGagCcCGUCCa -3'
miRNA:   3'- cGCUCggUUUCUGGAACaaGuGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 99669 0.68 0.991411
Target:  5'- cGCaGAGCCGcuGGGGCCUg---CGCG-CCg -3'
miRNA:   3'- -CG-CUCGGU--UUCUGGAacaaGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 100761 0.68 0.991411
Target:  5'- -gGAGCUGcgcGAGGCCgcgGacCGCGUCCu -3'
miRNA:   3'- cgCUCGGU---UUCUGGaa-CaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 101606 0.66 0.99826
Target:  5'- gGUGGGCC-GGGGCCUucgUGUUCu--UCCu -3'
miRNA:   3'- -CGCUCGGuUUCUGGA---ACAAGugcAGG- -5'
29561 3' -49.6 NC_006151.1 + 101942 0.71 0.949914
Target:  5'- gGCGAGCCAggAGGACCUgagcagCACG-Ca -3'
miRNA:   3'- -CGCUCGGU--UUCUGGAacaa--GUGCaGg -5'
29561 3' -49.6 NC_006151.1 + 102015 0.69 0.983696
Target:  5'- cGCGAGCCcauGGGCU----UCGcCGUCCg -3'
miRNA:   3'- -CGCUCGGuu-UCUGGaacaAGU-GCAGG- -5'
29561 3' -49.6 NC_006151.1 + 102119 0.72 0.930521
Target:  5'- cGCGGGCCGGAG-CCU-GUUCcccggGCGcgCCg -3'
miRNA:   3'- -CGCUCGGUUUCuGGAaCAAG-----UGCa-GG- -5'
29561 3' -49.6 NC_006151.1 + 102288 0.67 0.99253
Target:  5'- cGCGgcccGGCCGGGGACUUUGUggcCG-CCa -3'
miRNA:   3'- -CGC----UCGGUUUCUGGAACAaguGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 103015 0.66 0.997513
Target:  5'- cGUGAGCaCGgacgagcgccucGGGGCCUgGUUCGCG-CUg -3'
miRNA:   3'- -CGCUCG-GU------------UUCUGGAaCAAGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 108377 0.72 0.91928
Target:  5'- -aGAGCCGAAGGCCggUGcaccgccggACGUCCg -3'
miRNA:   3'- cgCUCGGUUUCUGGa-ACaag------UGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 109113 0.66 0.99826
Target:  5'- gGCGAGCCGccGGCC-----CGCGcCCg -3'
miRNA:   3'- -CGCUCGGUuuCUGGaacaaGUGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.