Results 21 - 40 of 76 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 102119 | 0.72 | 0.930521 |
Target: 5'- cGCGGGCCGGAG-CCU-GUUCcccggGCGcgCCg -3' miRNA: 3'- -CGCUCGGUUUCuGGAaCAAG-----UGCa-GG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 102015 | 0.69 | 0.983696 |
Target: 5'- cGCGAGCCcauGGGCU----UCGcCGUCCg -3' miRNA: 3'- -CGCUCGGuu-UCUGGaacaAGU-GCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 101942 | 0.71 | 0.949914 |
Target: 5'- gGCGAGCCAggAGGACCUgagcagCACG-Ca -3' miRNA: 3'- -CGCUCGGU--UUCUGGAacaa--GUGCaGg -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 101606 | 0.66 | 0.99826 |
Target: 5'- gGUGGGCC-GGGGCCUucgUGUUCu--UCCu -3' miRNA: 3'- -CGCUCGGuUUCUGGA---ACAAGugcAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 100761 | 0.68 | 0.991411 |
Target: 5'- -gGAGCUGcgcGAGGCCgcgGacCGCGUCCu -3' miRNA: 3'- cgCUCGGU---UUCUGGaa-CaaGUGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 99669 | 0.68 | 0.991411 |
Target: 5'- cGCaGAGCCGcuGGGGCCUg---CGCG-CCg -3' miRNA: 3'- -CG-CUCGGU--UUCUGGAacaaGUGCaGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 96534 | 0.68 | 0.991411 |
Target: 5'- cCGGGa-GAAGGCCUUGagCcCGUCCa -3' miRNA: 3'- cGCUCggUUUCUGGAACaaGuGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 96447 | 0.66 | 0.996515 |
Target: 5'- gGCGAGCCAGGcGuCCagGUccgccUCGCGgcUCCg -3' miRNA: 3'- -CGCUCGGUUU-CuGGaaCA-----AGUGC--AGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 96143 | 0.74 | 0.864205 |
Target: 5'- cGCGAaaguacgcGUCAAAGACCUcgGgccaCGCGUCCg -3' miRNA: 3'- -CGCU--------CGGUUUCUGGAa-Caa--GUGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 95141 | 0.68 | 0.987242 |
Target: 5'- cGCGccGCCGGGucGGCCaUGUcCAUGUCCa -3' miRNA: 3'- -CGCu-CGGUUU--CUGGaACAaGUGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 94697 | 0.69 | 0.974431 |
Target: 5'- cGCG-GCCAcGGACCacUGcgCGCGcUCCa -3' miRNA: 3'- -CGCuCGGUuUCUGGa-ACaaGUGC-AGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 93580 | 0.68 | 0.985552 |
Target: 5'- gGCGcGCCAAAGAgCggGcUCGCG-CCg -3' miRNA: 3'- -CGCuCGGUUUCUgGaaCaAGUGCaGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 91358 | 0.67 | 0.993531 |
Target: 5'- cGCc-GCCGGucGACCUUGagCGCGUCg -3' miRNA: 3'- -CGcuCGGUUu-CUGGAACaaGUGCAGg -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 90051 | 0.73 | 0.871938 |
Target: 5'- gGCGAuGCCGAGGcgcGCCUcgGUgcgCACGUUCa -3' miRNA: 3'- -CGCU-CGGUUUC---UGGAa-CAa--GUGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 87347 | 0.68 | 0.990927 |
Target: 5'- cCGGGCCuccAGGGCCUggcggcccccgucGcgCACGUCCc -3' miRNA: 3'- cGCUCGGu--UUCUGGAa------------CaaGUGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 83126 | 0.68 | 0.988776 |
Target: 5'- cGCaGAGCUcgGGcGCCUUGUaCGCG-CCa -3' miRNA: 3'- -CG-CUCGGuuUC-UGGAACAaGUGCaGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 73967 | 0.7 | 0.971612 |
Target: 5'- cGCGuGGCCAccguGGCCaUGccCGCGUCCg -3' miRNA: 3'- -CGC-UCGGUuu--CUGGaACaaGUGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 73940 | 0.77 | 0.70499 |
Target: 5'- aGCGAGCCGucGugCgUGcgCAUGUCCc -3' miRNA: 3'- -CGCUCGGUuuCugGaACaaGUGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 69433 | 0.69 | 0.981664 |
Target: 5'- gGCGGcGCC----GCCgccGUUCGCGUCCu -3' miRNA: 3'- -CGCU-CGGuuucUGGaa-CAAGUGCAGG- -5' |
|||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 67858 | 0.66 | 0.997049 |
Target: 5'- gGCGAGCCGGc-GCCgagGUggcgCGCGcgCCa -3' miRNA: 3'- -CGCUCGGUUucUGGaa-CAa---GUGCa-GG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home