Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29561 | 3' | -49.6 | NC_006151.1 | + | 123157 | 0.66 | 0.997914 |
Target: 5'- cGCGAGCUggaGAAGACCcUG--CGCGUg- -3' miRNA: 3'- -CGCUCGG---UUUCUGGaACaaGUGCAgg -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 13473 | 0.66 | 0.998059 |
Target: 5'- cGCGGGCC--GGACCgccccgccgacUCGgGUCCu -3' miRNA: 3'- -CGCUCGGuuUCUGGaaca-------AGUgCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 46388 | 0.66 | 0.998195 |
Target: 5'- gGCGAGCCccgauGAGccACCagggUGUgaacuauaucgaCACGUCCg -3' miRNA: 3'- -CGCUCGGu----UUC--UGGa---ACAa-----------GUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 101606 | 0.66 | 0.99826 |
Target: 5'- gGUGGGCC-GGGGCCUucgUGUUCu--UCCu -3' miRNA: 3'- -CGCUCGGuUUCUGGA---ACAAGugcAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 109113 | 0.66 | 0.99826 |
Target: 5'- gGCGAGCCGccGGCC-----CGCGcCCg -3' miRNA: 3'- -CGCUCGGUuuCUGGaacaaGUGCaGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 67858 | 0.66 | 0.997049 |
Target: 5'- gGCGAGCCGGc-GCCgagGUggcgCGCGcgCCa -3' miRNA: 3'- -CGCUCGGUUucUGGaa-CAa---GUGCa-GG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 40105 | 0.66 | 0.997049 |
Target: 5'- gGCGAGgaCGGGGACUcUGUggagaucgUCGgCGUCCg -3' miRNA: 3'- -CGCUCg-GUUUCUGGaACA--------AGU-GCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 127331 | 0.67 | 0.99253 |
Target: 5'- cGCGGGCgGGGGugCUgGUaCACGUg- -3' miRNA: 3'- -CGCUCGgUUUCugGAaCAaGUGCAgg -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 35233 | 0.67 | 0.993531 |
Target: 5'- gGCGAGCCGAGauGGCCgc---CGCGggggCCg -3' miRNA: 3'- -CGCUCGGUUU--CUGGaacaaGUGCa---GG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 49036 | 0.67 | 0.993531 |
Target: 5'- cCGGGCCAGGcccacgggcuGGCCUUca--GCGUCCg -3' miRNA: 3'- cGCUCGGUUU----------CUGGAAcaagUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 91358 | 0.67 | 0.993531 |
Target: 5'- cGCc-GCCGGucGACCUUGagCGCGUCg -3' miRNA: 3'- -CGcuCGGUUu-CUGGAACaaGUGCAGg -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 62181 | 0.67 | 0.994421 |
Target: 5'- gGCGgaGGCCGcccuGGCCgUGUUCACG-CUg -3' miRNA: 3'- -CGC--UCGGUuu--CUGGaACAAGUGCaGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 41617 | 0.67 | 0.995209 |
Target: 5'- cGCGccCCGGAaGCCggcgUCACGUCCg -3' miRNA: 3'- -CGCucGGUUUcUGGaacaAGUGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 135356 | 0.67 | 0.995209 |
Target: 5'- cGCGAGCCGccGcGCgUUGgcCGCGUgCg -3' miRNA: 3'- -CGCUCGGUuuC-UGgAACaaGUGCAgG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 53487 | 0.67 | 0.995905 |
Target: 5'- aGCGAGCCGuggcacgcgAAGGCCagGUgcuccgccgCGCGcCCc -3' miRNA: 3'- -CGCUCGGU---------UUCUGGaaCAa--------GUGCaGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 123625 | 0.67 | 0.995905 |
Target: 5'- cGCGAGCU--GGugCUggcgGUugcagucuUCAgGUCCg -3' miRNA: 3'- -CGCUCGGuuUCugGAa---CA--------AGUgCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 63426 | 0.66 | 0.996458 |
Target: 5'- gGCGGGCgGcacgucgcacagcGAGGCCagGUcgaGCGUCCg -3' miRNA: 3'- -CGCUCGgU-------------UUCUGGaaCAag-UGCAGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 127809 | 0.66 | 0.996515 |
Target: 5'- cGgGGGCgCGAGGuCCUugcgGUUCACGUa- -3' miRNA: 3'- -CgCUCG-GUUUCuGGAa---CAAGUGCAgg -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 96447 | 0.66 | 0.996515 |
Target: 5'- gGCGAGCCAGGcGuCCagGUccgccUCGCGgcUCCg -3' miRNA: 3'- -CGCUCGGUUU-CuGGaaCA-----AGUGC--AGG- -5' |
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29561 | 3' | -49.6 | NC_006151.1 | + | 3184 | 0.66 | 0.997049 |
Target: 5'- aGCGGGUCGuaGAGcACCaccacGcgCACGUCCu -3' miRNA: 3'- -CGCUCGGU--UUC-UGGaa---CaaGUGCAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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