miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 3' -49.6 NC_006151.1 + 53487 0.67 0.995905
Target:  5'- aGCGAGCCGuggcacgcgAAGGCCagGUgcuccgccgCGCGcCCc -3'
miRNA:   3'- -CGCUCGGU---------UUCUGGaaCAa--------GUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 123625 0.67 0.995905
Target:  5'- cGCGAGCU--GGugCUggcgGUugcagucuUCAgGUCCg -3'
miRNA:   3'- -CGCUCGGuuUCugGAa---CA--------AGUgCAGG- -5'
29561 3' -49.6 NC_006151.1 + 135356 0.67 0.995209
Target:  5'- cGCGAGCCGccGcGCgUUGgcCGCGUgCg -3'
miRNA:   3'- -CGCUCGGUuuC-UGgAACaaGUGCAgG- -5'
29561 3' -49.6 NC_006151.1 + 41617 0.67 0.995209
Target:  5'- cGCGccCCGGAaGCCggcgUCACGUCCg -3'
miRNA:   3'- -CGCucGGUUUcUGGaacaAGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 62181 0.67 0.994421
Target:  5'- gGCGgaGGCCGcccuGGCCgUGUUCACG-CUg -3'
miRNA:   3'- -CGC--UCGGUuu--CUGGaACAAGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 35233 0.67 0.993531
Target:  5'- gGCGAGCCGAGauGGCCgc---CGCGggggCCg -3'
miRNA:   3'- -CGCUCGGUUU--CUGGaacaaGUGCa---GG- -5'
29561 3' -49.6 NC_006151.1 + 49036 0.67 0.993531
Target:  5'- cCGGGCCAGGcccacgggcuGGCCUUca--GCGUCCg -3'
miRNA:   3'- cGCUCGGUUU----------CUGGAAcaagUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 91358 0.67 0.993531
Target:  5'- cGCc-GCCGGucGACCUUGagCGCGUCg -3'
miRNA:   3'- -CGcuCGGUUu-CUGGAACaaGUGCAGg -5'
29561 3' -49.6 NC_006151.1 + 127331 0.67 0.99253
Target:  5'- cGCGGGCgGGGGugCUgGUaCACGUg- -3'
miRNA:   3'- -CGCUCGgUUUCugGAaCAaGUGCAgg -5'
29561 3' -49.6 NC_006151.1 + 102288 0.67 0.99253
Target:  5'- cGCGgcccGGCCGGGGACUUUGUggcCG-CCa -3'
miRNA:   3'- -CGC----UCGGUUUCUGGAACAaguGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 58512 0.67 0.99253
Target:  5'- cGCGGGCC---GGCCUcGUcCuCGUCCu -3'
miRNA:   3'- -CGCUCGGuuuCUGGAaCAaGuGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 7209 0.68 0.991874
Target:  5'- aGCGAGCCAAucagaugauuuucggGGAagcuuCCgUGUgCACGUCa -3'
miRNA:   3'- -CGCUCGGUU---------------UCU-----GGaACAaGUGCAGg -5'
29561 3' -49.6 NC_006151.1 + 99669 0.68 0.991411
Target:  5'- cGCaGAGCCGcuGGGGCCUg---CGCG-CCg -3'
miRNA:   3'- -CG-CUCGGU--UUCUGGAacaaGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 135408 0.68 0.991411
Target:  5'- uCGucGCCGGAGGCCUcGUggCGCG-CCa -3'
miRNA:   3'- cGCu-CGGUUUCUGGAaCAa-GUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 100761 0.68 0.991411
Target:  5'- -gGAGCUGcgcGAGGCCgcgGacCGCGUCCu -3'
miRNA:   3'- cgCUCGGU---UUCUGGaa-CaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 96534 0.68 0.991411
Target:  5'- cCGGGa-GAAGGCCUUGagCcCGUCCa -3'
miRNA:   3'- cGCUCggUUUCUGGAACaaGuGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 87347 0.68 0.990927
Target:  5'- cCGGGCCuccAGGGCCUggcggcccccgucGcgCACGUCCc -3'
miRNA:   3'- cGCUCGGu--UUCUGGAa------------CaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 65974 0.68 0.990162
Target:  5'- uCGAGCCGGuccucgccGGCCgcgagCGCGUCCu -3'
miRNA:   3'- cGCUCGGUUu-------CUGGaacaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 64962 0.68 0.990162
Target:  5'- uGCGGGCgc-AGGCCgagcgcCACGUCCa -3'
miRNA:   3'- -CGCUCGguuUCUGGaacaa-GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 34478 0.68 0.990162
Target:  5'- gGCGGGUCc-GGGCUcgagGUUCGgGUCCg -3'
miRNA:   3'- -CGCUCGGuuUCUGGaa--CAAGUgCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.